Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi160g00016 ATGGATGCTACAACGTCTTGTGATTTTTCTTCATTGGAATCTGTTCAACATCACTTGCTTGAGCTTGAACATGATTTCCAAACTCTCATCGATATGGATGCATCCAACCACCAAATCTGTTATTCATTTCCGAGCCCTAACTCTAGTGATGATTCAACGCAGCAGGCCGTTAGTAACGGCGCTGATGTGAAGAAATCAACCGCGTCCAAAAGGGGATCGTCTGCAATGGCGCGTGAATCTCACGCGCCACCGATGTGGAAGCACTACCGGGGCGTGAGGCGTAGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGATCCGAAGAAGAACGGTGCTAGAGTTTGGCTTGGGACTTATGAGACGGAAGAGGAAGCTGGTTTGGCTTATGATAGAGCTGCTTTCAAGATGCGTGGCAGTAAAGCCAAGCTTAATTTTCCCCATCTCATTGGCTCCCACGCGCCGCCGGAGCCGGTGAGAGTGGTGGCACCATCAAAGCGGAACTCGCCTTGTTCGCCGGCTTCGGAGTCACAAGGGTTAAAGAAAAGGAAGAGGCTAATTGATGTATTGAATAGGTTAGCAAAGTATAGAAGGCAAGTGCATGTGTTTGAATTTGAAATGAGTTCACAGGCAAATGATGTTGATCAATGGATGAATAAGTTAGAAGAACACTTGACTGTGGTGTAA 684 0.481 MDATTSCDFSSLESVQHHLLELEHDFQTLIDMDASNHQICYSFPSPNSSDDSTQQAVSNGADVKKSTASKRGSSAMARESHAPPMWKHYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETEEEAGLAYDRAAFKMRGSKAKLNFPHLIGSHAPPEPVRVVAPSKRNSPCSPASESQGLKKRKRLIDVLNRLAKYRRQVHVFEFEMSSQANDVDQWMNKLEEHLTVV 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi160g00016 227 Gene3D AP2/ERF domain 87 147 IPR036955 GO:0003700|GO:0006355
Sebi160g00016 227 CDD AP2 87 148 IPR001471 GO:0003700|GO:0006355
Sebi160g00016 227 Pfam AP2 domain 88 138 IPR001471 GO:0003700|GO:0006355
Sebi160g00016 227 PRINTS Ethylene responsive element binding protein signature 128 148 IPR001471 GO:0003700|GO:0006355
Sebi160g00016 227 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Sebi160g00016 227 FunFam Ethylene-responsive transcription factor 2 87 147 - -
Sebi160g00016 227 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Sebi160g00016 227 MobiDBLite consensus disorder prediction 41 84 - -
Sebi160g00016 227 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
Sebi160g00016 227 MobiDBLite consensus disorder prediction 41 74 - -
Sebi160g00016 227 SUPERFAMILY DNA-binding domain 88 147 IPR016177 GO:0003677
Sebi160g00016 227 PANTHER DNA-BINDING DOMAIN 56 180 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi160g00016 Sebi-Chr160 182743 183426 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi160g00016 57 187 AP2-EREBP Transcription Factor Family AT2G44840 58.333 7.65e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi160g00016 AP2 2.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi160g00016 K09286 - gmx:100527194 271.937