Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi160g00013 ATGCATGTGTCTCTTTTGAAGCTTTGTAACTTTATAGTTTTTGTCATTCTTGTTATTCTTTGTACATTTGGTGCATTGCTTGACAATGATTGGCATTGGAGTTTGGAGGCTAAGGAGATCCTATTGAGTTTGAAAGATTGTTTTGAGGATTTGGAGAGACTATCAAACTTCTCTGAGGTTCTAATTTTGATTCTGAGTTCAGAAGTGTGCTGGAAATTAGGAGTAGAAGATAAAGAAGCTTCAGAAAAGGGGATAAGAAAGAAAATGGTAGAAGGGACCATGTCACTTGAAGCTGTTATAAAGGAAGCTGTTGATCTGGAGAACATTCCTCTTGAGGAGGTTTTTGATAATCTTAAATGCACAAGAGAAGGTTTAAGCTCTGAGCAAGTACAGGAGAGGCTAGACTTGTTTGGATACAATAAACTTGAAGAAAAGAAGGAAAGTAAAATACTAAAGTTTTTGGGCTTTATGTGGAATCCTCTGTCATGGGTTATGGAAGCTGCTGCTCTCATGGCCATTGCTATGGCACATGGAGGGGGTGAACCTGGAGATTATCAGGATTTTGCTGGCATAATTATTTTGCTACTTATAAACTCTACCATCAGTTTCATAGAAGAAAATAATGCTGGTAATGCAGCTGCTGCCCTTATGGCAAGATTGGCCCCAAAAGCAAAGGTACTCCGTGATGGAAAATGGAGTGAAGAAGATGCTTCAGTGTTGGTTCCTGGAGACATAATTAGCATCAAGCTAGGTGACATCATTCCTGCTGATGCACGTCTCCTTGAAGGAGATCCTTTGAAGATTGATCAGTCTGCTCTTACTGGAGAGTCACTTCCTGTCACAAAAAGTCCTGGAGAAGGAGTATATTCTGGTTCAACTTGCAAGCAAGGAGAAATTGAGGCAGTTGTTATTGCAACTGGAGTTCACACTTTTTTTGGGAAGGCAGCTCATCTTGTGGAAAATACAACACATGTTGGCCATTTCCAGAAGGTTCTAACATCTATTGGGAATTTTTGCATCTGTTCAATTGCTGTTGGGATGATTATTGAAATCATTGTGATATATGGGATCTACAGAAGGGAATACCGAGTTGGTATTGATAACCTCCTTGTGCTACTAATTGGTGGGATCCCTATTGCAATGCCAACTGTCCTTTCTGTTACAATGGCTATTGGTTCACACCGTTTGTCTCAGCAGGGTGCCATAACTAAGAGAATGACTGCCATTGAAGAAATGGCTGGAATGGATGTGTTATGTAGTGACAAAACAGGCACATTAACTCTTAACAAGCTTACAGTGGACAAGAATATGATTGAGGTTTTTGCCAAAGGTGTTGACAAGGATATGGTTGTACTTATGGCTGCAAGAGCATCAAGGCTAGAGAACCAGGATGCAATTGATTGTGCAATTGTTTCAATGTTGGCAGACCCAAAGGAGGCAAGAGCTGGAATAAAAGAAGTTCACTTCCTTCCATTCAATCCGACAGATAAAAGAACTGCACTTACATACATTGATGCTGCTGGTAAGATGCACAGGGTTAGCAAAGGTGCACCAGAACAGATTCTCAACCTTGCACATAACAAAGCAGAAATTAGACAGAAGGTTCATTCAATCATTGACAAGTTTGCAGAACGTGGACTTCGTTCTCTTGCAGTTGCTCGCCAGGAAGTACCTGAGGGAAATAAAGACAGTCCAGGAGCACCATGGGAGTTTGTTGGCCTTCTCCCTCTTTTTGACCCTCCTCGTCATGATAGCGCAGAAACAATCAGAAGAGCTCTTGATCTTGGTGTCAGTGTCAAAATGATCACTGGTGATCAACTTGCAATAGGTAAGGAAACAGGAAGGCGTCTAGGGATGGGCACTAACATGTATCCTTCTTCATCACTGCTTGGTGAAAATAAAGATGAATTGGGTGCTGTCTCCATTGATGATCTCATTGAGAGTGCTGATGGTTTTGCTGGTGTCTTCCCTGAGCACAAGTATGAGATTGTGAAGAGGTTACAAGCTCGAAAGCACATTTGTGGGATGACTGGTGATGGGGTGAATGATGCACCAGCCCTAAAGATAGCTGACATAGGTATTGCAGTAGCAGATTCTACAGATGCTGCCAGAAGTGCTGCTGACATAGTGCTAACAGAACCTGGCTTGAGTGTGATCATAAGTGCAGTTTTAACTAGCCGTGCAATTTTCCAGAGAATGAAAAACTATACAATATATGCTGTATCTATCACTATTCGTATTGTGCTGGGTTTCATGTTACTTAACTGCTTTTGGAAATTTGACTTTCCTCCCTTCATGGTTCTTGTCATTGCCATCCTCAATGATGGTACCATCATGACAATATCCAAAGACAGGGTTAAGCCTTCTCCAGTTCCTGATAGTTGGAAGCTTAGTGAAATTTTTGCAACTGGGATTATTCTTGGTAGCTATCTGGCTCTAATGACAGTGATCTTCTTCTGGGTAGTTTTTGAAACAAACTTCTTTCCAAACCATTTTGGTGTGAGACATTTCCGCGCCACTACAAATGATCCTGTTACTGATGAAATGAAACAAATGTTGGCATCTGCTGTCTATCTTCAAGTCAGTACAATTAGCCAAGCCTTAATCTTTGTGACACGCTCTAGGGGTTGGTCCTACACAGAAAGACCTGGTGTTTTGCTTGTTATTGCCTTTGTTATTGCTCAGCTGGTTGCAACTGTTATATCTGCCACTGCCACTTGGAAAATTGCTGGAATCAGAAGCATAGGTTGGGGCTGGACAGGAGTCATTTGGTTGTTCAATACTATAACTTATATTTTTCTGGATCCTTTAAAGTTTGCTGTTCGTTATGCACTAAGTGGAAGGGCATGGAATCTGGTGGTAGACCAAAGAACTGCATTCACAAACAAAAATGACTTTGGAAGAGAAGCTCGTGAGGCTGCATGGGCTGCTGAACAGAGAACCTTGCATGGCCTTCGCTCTGTTGAGTCAAAAACATACACAGAGAAACACACCTTTAGAGAAATAAATACATTGGCAGAAGAGGCCAGGAGGCGAGCAGAGATAGCAAGGTTGAGAGAGCTTCACACTCTTAAAGGTAGAGTGGAATCGTTTGCCAAGCTAAGGGGTTTGGATATCGATGCCATGAACGGGCACTATACAGTCTAA 3147 0.4172 MHVSLLKLCNFIVFVILVILCTFGALLDNDWHWSLEAKEILLSLKDCFEDLERLSNFSEVLILILSSEVCWKLGVEDKEASEKGIRKKMVEGTMSLEAVIKEAVDLENIPLEEVFDNLKCTREGLSSEQVQERLDLFGYNKLEEKKESKILKFLGFMWNPLSWVMEAAALMAIAMAHGGGEPGDYQDFAGIIILLLINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWSEEDASVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKSPGEGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVENTTHVGHFQKVLTSIGNFCICSIAVGMIIEIIVIYGIYRREYRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNMIEVFAKGVDKDMVVLMAARASRLENQDAIDCAIVSMLADPKEARAGIKEVHFLPFNPTDKRTALTYIDAAGKMHRVSKGAPEQILNLAHNKAEIRQKVHSIIDKFAERGLRSLAVARQEVPEGNKDSPGAPWEFVGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGENKDELGAVSIDDLIESADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKIADIGIAVADSTDAARSAADIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLNCFWKFDFPPFMVLVIAILNDGTIMTISKDRVKPSPVPDSWKLSEIFATGIILGSYLALMTVIFFWVVFETNFFPNHFGVRHFRATTNDPVTDEMKQMLASAVYLQVSTISQALIFVTRSRGWSYTERPGVLLVIAFVIAQLVATVISATATWKIAGIRSIGWGWTGVIWLFNTITYIFLDPLKFAVRYALSGRAWNLVVDQRTAFTNKNDFGREAREAAWAAEQRTLHGLRSVESKTYTEKHTFREINTLAEEARRRAEIARLRELHTLKGRVESFAKLRGLDIDAMNGHYTV 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi160g00013 1048 Pfam haloacid dehalogenase-like hydrolase 415 691 - -
Sebi160g00013 1048 Pfam E1-E2 ATPase 220 398 - -
Sebi160g00013 1048 CDD P-type_ATPase_H 124 939 IPR006534 GO:0008553|GO:0016020|GO:0120029
Sebi160g00013 1048 SUPERFAMILY HAD-like 415 724 IPR036412 -
Sebi160g00013 1048 Gene3D - 416 714 IPR023214 -
Sebi160g00013 1048 Pfam Cation transporter/ATPase, N-terminus 108 171 IPR004014 -
Sebi160g00013 1048 FunFam Plasma membrane ATPase 571 725 - -
Sebi160g00013 1048 NCBIfam HAD-IC family P-type ATPase 652 756 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi160g00013 1048 NCBIfam HAD-IC family P-type ATPase 191 626 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi160g00013 1048 Gene3D - 997 1048 - -
Sebi160g00013 1048 Gene3D - 222 306 - -
Sebi160g00013 1048 PRINTS P-type cation-transporting ATPase superfamily signature 677 696 - -
Sebi160g00013 1048 PRINTS P-type cation-transporting ATPase superfamily signature 419 433 - -
Sebi160g00013 1048 PRINTS P-type cation-transporting ATPase superfamily signature 573 584 - -
Sebi160g00013 1048 PRINTS P-type cation-transporting ATPase superfamily signature 269 283 - -
Sebi160g00013 1048 PRINTS P-type cation-transporting ATPase superfamily signature 700 712 - -
Sebi160g00013 1048 PRINTS P-type cation-transporting ATPase superfamily signature 595 605 - -
Sebi160g00013 1048 PRINTS H+-transporting ATPase (proton pump) signature 708 733 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi160g00013 1048 PRINTS H+-transporting ATPase (proton pump) signature 858 879 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi160g00013 1048 PRINTS H+-transporting ATPase (proton pump) signature 649 665 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi160g00013 1048 PRINTS H+-transporting ATPase (proton pump) signature 535 553 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi160g00013 1048 PRINTS H+-transporting ATPase (proton pump) signature 677 693 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi160g00013 1048 ProSitePatterns E1-E2 ATPases phosphorylation site. 421 427 IPR018303 -
Sebi160g00013 1048 FunFam Plasma membrane ATPase 222 306 - -
Sebi160g00013 1048 PANTHER CALCIUM-TRANSPORTING ATPASE 107 981 - -
Sebi160g00013 1048 SUPERFAMILY Calcium ATPase, transmembrane domain M 105 945 IPR023298 -
Sebi160g00013 1048 Gene3D - 431 578 IPR023299 GO:0000166
Sebi160g00013 1048 SFLD p-type atpase 401 728 IPR044492 -
Sebi160g00013 1048 Gene3D - 184 913 - -
Sebi160g00013 1048 FunFam Plasma membrane ATPase 431 578 - -
Sebi160g00013 1048 SUPERFAMILY Calcium ATPase, transduction domain A 222 319 IPR008250 -
Sebi160g00013 1048 NCBIfam plasma-membrane proton-efflux P-type ATPase 124 903 IPR006534 GO:0008553|GO:0016020|GO:0120029
Sebi160g00013 1048 SFLD Haloacid Dehalogenase 401 728 - -
Sebi160g00013 1048 SMART Cation_ATPase_N_a_2 105 177 IPR004014 -
Sebi160g00013 1048 FunFam ATPase 4 plasma membrane-type 661 913 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi160g00013 Sebi-Chr160 139614 147675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi160g00013 96 1048 Primary Pumps ATPases AT5G62670 80.398 0.0 1555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi160g00013 K01535 - gmx:100794938 1661.74