Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi15g00077 ATGATTGGAAAAGGTGGATTTGGTAAAGTTTACCTAGGTATTGTACAAGGTGACAAAAGAGTTGCTGTAAAGATACTTTCATTGTCATCAGTGCAAGGATACAAGGAGTTTAAGTCAGAGGCCAAATTATTGATGCTTGTTCATCATAGAAATGTGGTTTCTCTTGTGGGTTACTGTGACGAAGGTGATAATAAAGCACTTATTTATGAATTTCTCCCAGGAGGAGACCTCCAACAACATTTGTCAGATAAAAACCAAAATATTTTGGAATGGAATGAGAGACTTCAAATTGCCTTGGATGCAGCAAATGGGTTGGACTATCTGCATAATGGATGTAAGCCACCTATAATTCATAGAGACGTAAAACCTTCCAACATCTTACTCGATGAAAAAATGCGTGCTAAGATTTCAGACTTTGGATTGTCTAGAACATTTGCAAACGACATTGACACTCATGTCTCAACTAATTTCCCAGCTGGCACGCCGGGTTACGTTGATCCTGAATCTCACTCCTCTGGGATTCTCAATAAAAAGAGTGATGTTTATAGTTTTGGGATAGTTTTGTTGGAGCTAATTACTGGTCAACCAGCAATAAGAGGAACTCCTAACAATCGTAGTCACATACTTTCTTGGGTTAACCTTAAACTTGAAACTGGAGATATCCAAGCAATAGTTGATCCAAGGTTACAAGGGAAGTATAATACTGCAGCAGCATGGAAATTCATAGACATAGCTTTGTCTTGCATCGCCTCTATTGCAATCCAAAGGCCTGACATAAGCCACGTAGCTTCAGAACTGAAAGATTGTTTGTCTCTAGAAATATCCCTTGAAAGGACTTTGTGCGATGATAGAAATTCATTAGTCAGGGGTACTATGCATGTCCAATTTAATGAATCAGACATAGGTCCAAATCCCAGGTAG 921 0.3876 MIGKGGFGKVYLGIVQGDKRVAVKILSLSSVQGYKEFKSEAKLLMLVHHRNVVSLVGYCDEGDNKALIYEFLPGGDLQQHLSDKNQNILEWNERLQIALDAANGLDYLHNGCKPPIIHRDVKPSNILLDEKMRAKISDFGLSRTFANDIDTHVSTNFPAGTPGYVDPESHSSGILNKKSDVYSFGIVLLELITGQPAIRGTPNNRSHILSWVNLKLETGDIQAIVDPRLQGKYNTAAAWKFIDIALSCIASIAIQRPDISHVASELKDCLSLEISLERTLCDDRNSLVRGTMHVQFNESDIGPNPR 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi15g00077 306 ProSitePatterns Protein kinases ATP-binding region signature. 2 24 IPR017441 GO:0005524
Sebi15g00077 306 Gene3D Phosphorylase Kinase; domain 1 2 72 - -
Sebi15g00077 306 Gene3D Transferase(Phosphotransferase) domain 1 73 286 - -
Sebi15g00077 306 SUPERFAMILY Protein kinase-like (PK-like) 1 265 IPR011009 -
Sebi15g00077 306 ProSiteProfiles Protein kinase domain profile. 1 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi15g00077 306 PANTHER OS07G0107800 PROTEIN-RELATED 2 270 - -
Sebi15g00077 306 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
Sebi15g00077 306 Pfam Protein tyrosine and serine/threonine kinase 2 265 IPR001245 GO:0004672|GO:0006468
Sebi15g00077 306 CDD STKc_IRAK 2 267 - -
Sebi15g00077 306 SMART serkin_6 1 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi15g00077 306 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 72 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi15g00077 Sebi-Chr15 2754126 2756049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi15g00077 1 270 Receptor kinase-like Gene Family AT2G28970 56.827 2.48e-108 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Sebi15g00077 PK_Tyr_Ser-Thr 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi15g00077 - - vra:106763618 465.307