Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi15g00040 ATGATTCATTCTCTAATGGTTTCCAAATCCATTCAATTCCTCTTTTTTCTTTGTACTCTTGCTTTTCTTTCACAAGTTGCTTTTGCTGACCCTCCATATGAAATTTGTTCCACAAGCAGCAGCTATGCAAATGGAAGTTCCTTTCAAAGCAATCTAAGGAGCCTCCTCCTCTCTTTGCCCTCCAATGCTTCAATCTCCAAATCCTATAATACTTCTTCCGGATTTGCCCCTGATGGAGTTTATGTCCTCTACATGTGTCTCAACTATGTTTCAAATGAAACTTGCCACAAATGCATAACAACTGCAATAGGAGATATTGTCAAACTCTGTCCTCAATCAAAAGAAGCAGTTGTGTGGGAGGAGTTTTGCCAATTACGTTATTCCAATAACAATTTCCTAGGTAGGTTGAATGTCACAGGGAACATTGGCTTGGACAATAAACTGAATCTTTCAGAACCAGAAAAATTTGAGTCTGCTGTGAATAAGATACTCAATAATCTTACTGAGGTAGCATCTTTTAATGTTTCCTCAAAGAAGTATGCTACTGGAGAAGTACCTTATGAAGATAAAACAATATATGCCTTAGTGCAGTGCACCAGAGATTTATCAGCCAATGATTGCAGTATTTGCTTAAAAAGTGCCATAAGAGAAATACCAGAGCCTAATTCCACAGGCTCTTTAATCAGCAATAATGAAGGCAAAAATAATTCAAGCAAAATATGGATGATTACAGCCATGGTAGTTGTGGTAGGCTTGGTGCTGATAATTTTTGTTTGCTTCATGTACTTTGTCAGGAATAAAAGAAATAGGCAAAGTAAGAATGGAATAGACAAAATATCTAAAGACTTCCCTTTTATTGATCTTGGATCTATTCGTGTGGCTACCAAGAACTTTTCTGATTCAAATATGCTTGGACAAGGTGGCTTTGGCCCTGTTTACAAGGGGATACTTAGTGATGGCCAGGAAGTGGCAATCAAGAGGCTCTCAACTTGCTCTGAGCAGGGCTCAGAGGAATTCATAAACGAGGTTATGCTGATAATGAAACTTCAACACAAAAATCTTGTAAAGCTTTTGGGATTTTGTGTAGATGGAGAAGAGAAGATTCTTGTATATGAATTTTTGCCTAATGGTAGCCTCGATGCTGTCCTTTTTGATGATCCAAAGCAAAAGGCACGGCTTGATTGGAACAAACGCCTGGACATAATAAATGGAATAGCAAAGGGGATTCTTTATCTTCATGAAGATTCTAGACTAAAAATAATTCATAGAGATCTAAAAGCAAGTAATGTGTTGTTGGACTCTGACATGAATCCAAAGATCTCAGACTTTGGAATGGCCAGGATATTTGCAGGAAGTGAAGGTGAAGCTAACACTGCTACAATAGTTGGCACATATGGATATATGGCTCCAGAATATGCAATGGAAGGGTTATATTCCATAAAATCTGATGTTTTTGGCTTTGGAGTTCTATTGCTTGAGATCATCACAGGGAAACGTAACGCGGGTTTCTATCACTCTAAAAACGCTCCTAGCCTTCTAGCATATGTGAGTATTGATCTTTGA 1563 0.3807 MIHSLMVSKSIQFLFFLCTLAFLSQVAFADPPYEICSTSSSYANGSSFQSNLRSLLLSLPSNASISKSYNTSSGFAPDGVYVLYMCLNYVSNETCHKCITTAIGDIVKLCPQSKEAVVWEEFCQLRYSNNNFLGRLNVTGNIGLDNKLNLSEPEKFESAVNKILNNLTEVASFNVSSKKYATGEVPYEDKTIYALVQCTRDLSANDCSICLKSAIREIPEPNSTGSLISNNEGKNNSSKIWMITAMVVVVGLVLIIFVCFMYFVRNKRNRQSKNGIDKISKDFPFIDLGSIRVATKNFSDSNMLGQGGFGPVYKGILSDGQEVAIKRLSTCSEQGSEEFINEVMLIMKLQHKNLVKLLGFCVDGEEKILVYEFLPNGSLDAVLFDDPKQKARLDWNKRLDIINGIAKGILYLHEDSRLKIIHRDLKASNVLLDSDMNPKISDFGMARIFAGSEGEANTATIVGTYGYMAPEYAMEGLYSIKSDVFGFGVLLLEIITGKRNAGFYHSKNAPSLLAYVSIDL 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi15g00040 520 FunFam Lectin-domain containing receptor kinase A4.3 374 518 - -
Sebi15g00040 520 SUPERFAMILY Protein kinase-like (PK-like) 278 504 IPR011009 -
Sebi15g00040 520 Gene3D - 31 132 IPR038408 -
Sebi15g00040 520 Gene3D - 142 233 IPR038408 -
Sebi15g00040 520 Pfam Protein tyrosine and serine/threonine kinase 302 499 IPR001245 GO:0004672|GO:0006468
Sebi15g00040 520 FunFam Cysteine-rich receptor-like protein kinase 28 32 131 - -
Sebi15g00040 520 Gene3D Transferase(Phosphotransferase) domain 1 374 518 - -
Sebi15g00040 520 ProSiteProfiles Gnk2-homologous domain profile. 30 132 IPR002902 -
Sebi15g00040 520 ProSiteProfiles Protein kinase domain profile. 298 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi15g00040 520 Pfam Salt stress response/antifungal 36 129 IPR002902 -
Sebi15g00040 520 Pfam Salt stress response/antifungal 151 220 IPR002902 -
Sebi15g00040 520 ProSiteProfiles Gnk2-homologous domain profile. 138 245 IPR002902 -
Sebi15g00040 520 SMART serkin_6 298 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi15g00040 520 Gene3D Phosphorylase Kinase; domain 1 260 373 - -
Sebi15g00040 520 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 516 - -
Sebi15g00040 520 FunFam Cysteine-rich receptor-like protein kinase 10 264 373 - -
Sebi15g00040 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi15g00040 Sebi-Chr15 1281272 1283588 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi15g00040 15 516 Receptor kinase-like Gene Family AT4G05200 42.068 1.23e-139 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi15g00040 PK_Tyr_Ser-Thr 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi15g00040 - - gmx:100798666 756.903