Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi15g00039 ATGGGCAAAGATAGACCTTCAGCTATGCTTTTGTTGATCATTTTTATGTTATCTATCCACAGCATTTCTGGTGCAGACCTCATAGATACTTATTGTCCAACTGAATTCCCAATTTACACCCCCAACGGTTCATTCCACAAGAATCTCAATCTTCTTATGGAGTCACTCTCCTCCAACACCGCTTCAAGGGGAGGTTTCTATAACACATCTATAGGAAAAGAACCAGACAGTGTGTATGGACAAACACTCTGCAGAGGGGACATCACAAACTCCACAGTTTGCCAGGAATGTGTTCAGAAAGCAAGCAAGGATATAATGAATAGGTGTAAGAGTGAAGATGCAGTGATATGGTATGAGCTTTGCCAAGTTCGCTACTCCTTTCAGATGTTTTTCTCAATCATGGTTTATACTGGAAAATATCCAGAGCAGATTAAGAAGGAGAAGAATGTCTCAGATGATCCTATTAGATTTGAAGAAGTCATGAAGTTTTTAATGAAGAATCTGTCAAATGAGGCAGCTTTTAATCCTGCTAGGAACATGTTTGCTGCTGGGGAAATTGAGTTTCCTAGGAAGAAGACAATTTATGGTCTAGTCCAATGTACCAGGGACATTTCTGAAACAGACTGCAGTAGTTGTTTGAGTACTGCATTTTCAGAATTGACTATATGCTGCTCCCACAGGGAAGGGGGGATTATTGTTAGTAGGAATTGCAATATGAGGTTTGGTTTGTCTGAGTTCTTCAATACTTCTTCAGCTTACCTGCTGATTTACCCAACTTCCAAAGTTCTTATTGGACTGTGCACTGCTTGCATCAGGCGAAAAAAGGATGAAGACAGAGATGAAGAAAAAAGCGAGAGGACACTATTACAAGAATTGTCTAGCCCCAAGAATGTAGCAATTACACAAGAAGGTGAGTTGATTAGTTCTGATGAACTGTTGTTCATGCCTTTAGCAACCATTAAGGCCGCTACTGGTGACTTTTCTGATACAAATAAGCTTGGACAAGGAGGGTTTGGTGCAGTGTACAAGGGTGTTCTACCAGATGGAAATGAAATAGCAGTTAAAAGACTATCAAGAAAGTCTTGGCAAGGCATAGAGGAATTCAAAAATGAGGTCATACTAATTGCCAAACTTCAACACAGGAATTTGGAAGATCCAGAACAGAGGCCCACTATGTCAGATGTGGTGGTTCTTCTAGGAAGTGAATCAATGGCTCTTCCTCAACCAAGGCAACCAGCATTTTCTTTGGGTAAGGTGCTTCATGTTGTGGACCCATCTACATCAACAAATCCTTCAGTCAATGAGAGTATATGGTCTAAAATTGTACCTAGATGA 1335 0.4045 MGKDRPSAMLLLIIFMLSIHSISGADLIDTYCPTEFPIYTPNGSFHKNLNLLMESLSSNTASRGGFYNTSIGKEPDSVYGQTLCRGDITNSTVCQECVQKASKDIMNRCKSEDAVIWYELCQVRYSFQMFFSIMVYTGKYPEQIKKEKNVSDDPIRFEEVMKFLMKNLSNEAAFNPARNMFAAGEIEFPRKKTIYGLVQCTRDISETDCSSCLSTAFSELTICCSHREGGIIVSRNCNMRFGLSEFFNTSSAYLLIYPTSKVLIGLCTACIRRKKDEDRDEEKSERTLLQELSSPKNVAITQEGELISSDELLFMPLATIKAATGDFSDTNKLGQGGFGAVYKGVLPDGNEIAVKRLSRKSWQGIEEFKNEVILIAKLQHRNLEDPEQRPTMSDVVVLLGSESMALPQPRQPAFSLGKVLHVVDPSTSTNPSVNESIWSKIVPR 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi15g00039 444 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 25 130 - -
Sebi15g00039 444 SUPERFAMILY Protein kinase-like (PK-like) 308 383 IPR011009 -
Sebi15g00039 444 ProSiteProfiles Protein kinase domain profile. 327 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi15g00039 444 Gene3D - 25 130 IPR038408 -
Sebi15g00039 444 Gene3D - 140 246 IPR038408 -
Sebi15g00039 444 ProSiteProfiles Gnk2-homologous domain profile. 138 246 IPR002902 -
Sebi15g00039 444 Pfam Salt stress response/antifungal 152 242 IPR002902 -
Sebi15g00039 444 Pfam Salt stress response/antifungal 37 127 IPR002902 -
Sebi15g00039 444 FunFam Cysteine-rich receptor-like protein kinase 10 141 246 - -
Sebi15g00039 444 ProSiteProfiles Gnk2-homologous domain profile. 26 130 IPR002902 -
Sebi15g00039 444 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 11 251 - -
Sebi15g00039 444 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Sebi15g00039 444 Gene3D Phosphorylase Kinase; domain 1 286 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi15g00039 Sebi-Chr15 1274628 1277604 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi15g00039 7 383 Receptor kinase-like Gene Family AT4G05200 34.679 1.24e-59 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi15g00039 Stress-antifung 2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi15g00039 - - lja:Lj1g3v0052350.1 592.808