Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi15g00016 ATGAACAAGCCCAAATCCAAATGGATATGTGCCGATGGCATAGATCCAAATAAAAGTGGGCTTTTTGATTGGAACAATTTGGGTGAACGGATAAGGCTATTATGTTATGGCTATCCGTTGTTCTCCTTGCTTTGCACAGAGACACAGTGTGGGAAAAAGAAGAAGGAGATGATGGCACAAACACTGTCAACGCCTCTGGCTCCCTCACTCTCCCTTATCAGCAACAACGGTTTCATCTCCAAATCCATCTCTAAAACCGTCTCATTTCCAGCTCCCAAGGTTCATGGCCTAAGCATCAAGTGCGTTCGTGTTGGAGGTGTTGAGATCCCAAACAACAAGCGAATTGAGTACTCACTTCAATACATTCACGGAGTTGGGCGTAGCAGGGCTCGACAAATCCTATGTGACATCAACATGGATAACAAAGTCACCAAGGATTTGTCCGAGGAAGAACTCATCACTCTTAGGGATGAAGTCTCCAAGTACATGATTGAAGGTGACTTGAGAAGGTTTAATGCGATTAATATAAAAAGGCTTAAGGATATCCAGTGCTACAGAGGAATCAGGCATATTCAGGGCCTTCCCTGTAGAGGACAGCGCACCAAGAACAATTGCCGGACCTTGAAGGGTAAGAAGGTTGCCATTGCTGGGAAGAAAAAGAAGTGA 666 0.4474 MNKPKSKWICADGIDPNKSGLFDWNNLGERIRLLCYGYPLFSLLCTETQCGKKKKEMMAQTLSTPLAPSLSLISNNGFISKSISKTVSFPAPKVHGLSIKCVRVGGVEIPNNKRIEYSLQYIHGVGRSRARQILCDINMDNKVTKDLSEEELITLRDEVSKYMIEGDLRRFNAINIKRLKDIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi15g00016 221 FunFam 30S ribosomal protein S13 171 220 - -
Sebi15g00016 221 SUPERFAMILY S13-like H2TH domain 102 213 IPR010979 GO:0003676
Sebi15g00016 221 Pfam Ribosomal protein S13/S18 103 207 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sebi15g00016 221 Gene3D - 102 170 - -
Sebi15g00016 221 NCBIfam 30S ribosomal protein S13 103 212 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sebi15g00016 221 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 97 219 - -
Sebi15g00016 221 ProSiteProfiles Ribosomal protein S13 family profile. 104 210 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sebi15g00016 221 ProSitePatterns Ribosomal protein S13 signature. 186 199 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sebi15g00016 221 FunFam 30S ribosomal protein S13 97 170 - -
Sebi15g00016 221 Hamap 30S ribosomal protein S13 [rpsM]. 101 217 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sebi15g00016 221 Gene3D 30s ribosomal protein s13, domain 2 171 221 IPR027437 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi15g00016 Sebi-Chr15 535240 536095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi15g00016 101 219 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 31.034 5.43e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi15g00016 K02952 - egr:104450469 246.514