Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi15g00002 ATGAGTGATAAAAACAGAAAACATAGGTGTAAAAAGAGGGGAGAATTTGAGATGATTTGCTATGGCAGTTCTCAGTTGAGGATGACAATACTATCATTGCTAATGGTGCTGCTTATGAAGCTTGGGAGTGCTGAGAATGGCCCATCCAATCGATGTCCCTTCCACCTATCTTGTACACAGAACAAGCTGATGCTTGAGCTGCCTGCAGTTCCCGTGCCTGTAAAACTCCTCGTCAGCGTCATTTACGACGAAACGCAGACAATAGTAGCACATGACCCCGAAAACTGTCTTCCGCGACTCATACTAAAGCTCAACTATTCATCATTTCTTCCTTTCTCGGGGGCTGATTCCGGTTATGGGGCCCGGAACAAAATTAGTTTCTTTGATTGTTCTTCAGCTGGGAAACGACATCTGAGAAACTACTATCAAACACAAGACGATGCGCAAGATATGTTATCTTGTCCAATTTATGCTGCAGATTATTATGAAAATAGTATCGTTGATTTGGACCTAGTATCATGCACCAAACTGTTTGACCGCGTTTTGCCCATACCAGCATATGACATACAGAGTAACTCACTCGTGCTGGGGTGGTCGGATACAAATATCGATAGAGGATGCTTTGACTGTAAGCACAAATCAAAGAAGAAGACTACAACCATTATTTTATCCACTGCAGCAGGTGTAATCCTTGGTTCAACAGTGCTGGCACTTTTGCTCGCTGCGATCTTTCGAGTGTATCACTTTTTACGGATGAGAGGCGAGGATCAGACAAGAGTCGAAAAGTTTTTGAAGGACTACAGAGCTTTAAAGCCAACCAGATTCTATTATGCTGATATCAAGAGAATTACACATCAATTCAAGGAAAAGTTAGGTGAAGGAGCTCATGGAGCTGTCTACAAAGGTAAATTATCCACTGAAATTCTGGTTGCTGTAAAGGTCCTCAACAACACAGAGTCAGATGGAACAGAGTTCATAAATGAAGTGGGAACCATGGGCAAAATCCACCATGTCAATGTCGTTCGCTTGCTTGGCTATTGCGCTGATGGATTTCATCGTGCTTTAGTTTATGACTTTTTCCAAAATGCCAAAGGAATTGAGTATCTTCACCAAGGTTGTGATCAAAGAATTCTTCACTTTGACATCAATCCTCATAACGTCTTGCTAGATGACACTTTCACACCCAAAATTTCAGACTTCGGATTGGCTAAGCTCTGCTCCAAAAATCGAAGCACTGTATCCATGACTGCAGCCAGAGGAACATTAGGCTACATGGCACCTGAAGTTTTTTCTAGAAACTTTGGCAATGTGTCTTATAAGTCTGATATCTACAGTTATGGTATGTTGTTGCTAGAGATGGTTGGAGGAAAAAAGAATGTTGAGACAAGTAAAGACAATTTCCAAGTTCTATATCCAGATTGGATACACAGTTTGCTTGAAGAAGGAGACATCCAAATCCCTATTGATGAAGAGGGAGATTTCAGAATTACAAAGAAACTGGCTATTGTGGGACTTTGGTGTATCCAGTGGCACCCAGTGAATCGCCCTTCCATGAAAACTGTGGTACAGATGCTTCAAGGAGAGGGAGAGAATTTGAAAGTTCCCCGAAACCCTTCGAGCCTACAGCTTCAACAAGTACCAGCGCTAATACTGCTGCAGGACGTCTCAATTTGGAGCTGGAAGTGA 1686 0.4223 MSDKNRKHRCKKRGEFEMICYGSSQLRMTILSLLMVLLMKLGSAENGPSNRCPFHLSCTQNKLMLELPAVPVPVKLLVSVIYDETQTIVAHDPENCLPRLILKLNYSSFLPFSGADSGYGARNKISFFDCSSAGKRHLRNYYQTQDDAQDMLSCPIYAADYYENSIVDLDLVSCTKLFDRVLPIPAYDIQSNSLVLGWSDTNIDRGCFDCKHKSKKKTTTIILSTAAGVILGSTVLALLLAAIFRVYHFLRMRGEDQTRVEKFLKDYRALKPTRFYYADIKRITHQFKEKLGEGAHGAVYKGKLSTEILVAVKVLNNTESDGTEFINEVGTMGKIHHVNVVRLLGYCADGFHRALVYDFFQNAKGIEYLHQGCDQRILHFDINPHNVLLDDTFTPKISDFGLAKLCSKNRSTVSMTAARGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGKKNVETSKDNFQVLYPDWIHSLLEEGDIQIPIDEEGDFRITKKLAIVGLWCIQWHPVNRPSMKTVVQMLQGEGENLKVPRNPSSLQLQQVPALILLQDVSIWSWK 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi15g00002 561 SUPERFAMILY Protein kinase-like (PK-like) 267 525 IPR011009 -
Sebi15g00002 561 ProSitePatterns Protein kinases ATP-binding region signature. 291 313 IPR017441 GO:0005524
Sebi15g00002 561 Pfam Protein tyrosine and serine/threonine kinase 286 361 IPR001245 GO:0004672|GO:0006468
Sebi15g00002 561 Gene3D Phosphorylase Kinase; domain 1 259 356 - -
Sebi15g00002 561 FunFam serine/threonine-protein kinase PBS1-like 253 359 - -
Sebi15g00002 561 Gene3D Transferase(Phosphotransferase) domain 1 357 538 - -
Sebi15g00002 561 FunFam PR5-like receptor kinase 357 537 - -
Sebi15g00002 561 ProSiteProfiles Protein kinase domain profile. 285 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi15g00002 561 PANTHER RUST RESISTANCE KINASE LR10-RELATED 363 539 IPR045874 GO:0004672
Sebi15g00002 561 Pfam Protein kinase domain 362 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi15g00002 Sebi-Chr15 142307 144179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi15g00002 228 559 Receptor kinase-like Gene Family AT1G66910 42.507 1.16e-89 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Sebi15g00002 Pkinase 6.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi15g00002 - - tpra:123893290 669.077