Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi159g00131 ATGCAGCTAGTAGCCTACCAATACCATAGCCACAGGTTCTGGATGATTCTGCTATGCCTTGCATTAACATTAATCCTATTACATGGAAGGGAAGAAGCTTCCAGTTCCAGACATGATGTCGTCAAAATCGGTGCCATTTTCACATTAAAAACTATAAACGGACGAGTTTCCAAAATTGCCATCGAAGCTGCTCAGAAAGATGTGAATTCCGACCCTCACTTCTTGGGTGGACGTAAATTGTCCATAGCCATCCATGATTCCAACTTCAGTGGTTTCCTTGGCTTTATTGGGGCCCTCAAGTTCTTGGTGACTGATACGGTAGCTATAATTGGTCCTCAAAGTTCAGTAATGGCTCATGTGCTTTCACATCTTGCAAATGGGCTCCATGTTCCTCTACTGTCCTTCACTGCTCTGGATCCCACCCTAACACCTCTTCAGTATCCTTTTTTTGTCCAAACAGCACCCAATGATCAGTTCCAGATGACTGCAGTTGCTGACATAATTAGTTATTTTGGTTGGAGACAAGTTATTGCAATTTTCAGTGATGATGATCAGAGTCGAAATGGGATAACTGTATTAGGTGATAAACTTGCTGACAGGCGCTGTAAGTTGTCTTATAAAGCAGCACTTCCCCCTGATCCAACCGCCACTCCAGCTGATGTTACTGATCAGTTGGTGAAGATTAAAAGCATGGAAGCTCGAGTAATTGTTTTAAACACCTTCAAGCAAACAGGCATGATGGTTTTTGATGTTGCTCAAAAACTAGGGATGATGAGCAAAGGGTATGTTTGGATAGCTACTTCTTGGCTATCAACTGTTTTGGATTCTACTTCACTAGCACTAAATACTTCTAACTCAATTCAAGGAGTTCTTACACTTCGCCCTTACACCCCTCAGTCAAGTAAAAAACAGGCCTTTATCTCAAGGTGGAACCACTTAAGTAATGGCTCAATTGGGTTAAATCCATATGGACTATATGCTTATGATTCTGTTTGGATGATTGCTCATGCATTAAAATTGTTTTTTGATCAGAATGGAACCATTTCATTCTCTAATAATACAAAATTAAATGGTATGAAGGGAGAGACTCTGGATCTTGGTGCTTTGAATGTTTTTGATGGAGGGAAACAGTTACTTGATAACATATTGCACATTAATATAACAGGGTTGACAGGACCTATTCAATTTGGTTCAGACAGGTCCCCTTTACATCCATCATATGACATCCTTAATGTAATTGGTACTGGTCATAGGAGAATTGGATACTGGTCTAATTATTCAGGGCTCTCTGTAATAATCCCTGAGAAACTTCAAACAAAACCTGCCAATCGTTCAAGTTCCAACCAGCATCTAGATGGTGTGATATGGCCTGGAAATACAACAGAAATGCCTCGTGGATGGGTTTTCCCAAATAATGGAAGGCAACTGAGAATTGGAGTTCCAAACAGAGTTAGTTATAGAGACATGGTCTCACAAATAAATGGCACTGATGCAGTACAAGGATATTGCATAGATATATTCCTTGCTGCCATAAAATTGCTTCCATATGCAGTTCAGTATAGGTTCATTCTGTTTGGAGATGGACATAAGAACCCAAGCTACTATGATCTTGTGAATATGATTACTTCTGATGCTTTTGATGCTGCTGTGGGTGACATAGCTATTGTTACTAACCGAACAAAGATTGTGGATTTTACTCAACCATATATAGAGTCAGGTTTAGTTGTGGTTGCTCCAGTTATAAAGTTGAAGTCAAGTGCTTGGGCTTTCTTGCGACCATTTACTCCACAGATGTGGGGTGTCACTGCACTTTTTTTCCTTGTTGTTGGAGCAGTGGTGTGGATTCTTGAACATAGAACAAACGATGAGTTTCGGGGGCCTCCAAAGAAGCAGATAGTTACCATCCTTTGGTTTAGTTTCTCAACCATGTTCTTTGCGCACAGAGAAAACACAGTTACTCCACTTGGTCGTGTTGTGTTGATAATTTGGCTTTTTGTGGTTCTGATAATCAATTCAAGCTATACTGCAAGCTTGACATCAATTCTAACTGTGCAACAGCTGTCCTCACCTGTAACAGGTATTGATAGCTTGATATCCAGCAGAGCACCTATAGGGTTCCAGGTAGGGTCATTTGTTGAAAATTATCTGACAGAGCAACTCAACATCCCAAAACATAGACTTGTTCCTCTTGGCTCACCACAAGAATATGCTATTGCCCTTGAGAAGGGAACTGTTGCAGCTGTGGTAGATGAAAGACCATATGTAGACCTATTCCTGTCAAATCACTGCAAATTCTCAATTAGGGGCCAAGAGTTCACCAAAGGTGGATGGGGATTTGCATTCCGGAGGGACTCTCCTTTAGCAATTGATATGTCAACTGCAATTCTGACTCTATCTGAGAATGGTGATCTTGGGAGGATCCGTGAAAAGTGGCTTTCAGAAAAGGCTTGTGGTTTTCATAGTACTGGGGATGAGCAGCTTCAAATAAATAGCTACATGGGCTTGTTTCTAATCTGTGGGACTGCATGTTTCCTGGCGCTTCTTATCTACTTCTTGCTACGTCGATTCAGTCAAAACTCCCCTCACAAAGCTGATCCTTCTAATCCTAGCAGATCACACTCTGCACGCATCCAAACTTTTCTAAATTTGGTTGATGAAAAAGAAGACATATCACACAAGAACTTGAAAAGAAAAGTTGAGGATATTTCATCACATGCTTATTCCAGAGAAAATCATTTGAGGAGTATATCCAAGAGAGTACAAATGGGCATTTCCCAAGAGGCTACTTATGGTTAA 2796 0.407 MQLVAYQYHSHRFWMILLCLALTLILLHGREEASSSRHDVVKIGAIFTLKTINGRVSKIAIEAAQKDVNSDPHFLGGRKLSIAIHDSNFSGFLGFIGALKFLVTDTVAIIGPQSSVMAHVLSHLANGLHVPLLSFTALDPTLTPLQYPFFVQTAPNDQFQMTAVADIISYFGWRQVIAIFSDDDQSRNGITVLGDKLADRRCKLSYKAALPPDPTATPADVTDQLVKIKSMEARVIVLNTFKQTGMMVFDVAQKLGMMSKGYVWIATSWLSTVLDSTSLALNTSNSIQGVLTLRPYTPQSSKKQAFISRWNHLSNGSIGLNPYGLYAYDSVWMIAHALKLFFDQNGTISFSNNTKLNGMKGETLDLGALNVFDGGKQLLDNILHINITGLTGPIQFGSDRSPLHPSYDILNVIGTGHRRIGYWSNYSGLSVIIPEKLQTKPANRSSSNQHLDGVIWPGNTTEMPRGWVFPNNGRQLRIGVPNRVSYRDMVSQINGTDAVQGYCIDIFLAAIKLLPYAVQYRFILFGDGHKNPSYYDLVNMITSDAFDAAVGDIAIVTNRTKIVDFTQPYIESGLVVVAPVIKLKSSAWAFLRPFTPQMWGVTALFFLVVGAVVWILEHRTNDEFRGPPKKQIVTILWFSFSTMFFAHRENTVTPLGRVVLIIWLFVVLIINSSYTASLTSILTVQQLSSPVTGIDSLISSRAPIGFQVGSFVENYLTEQLNIPKHRLVPLGSPQEYAIALEKGTVAAVVDERPYVDLFLSNHCKFSIRGQEFTKGGWGFAFRRDSPLAIDMSTAILTLSENGDLGRIREKWLSEKACGFHSTGDEQLQINSYMGLFLICGTACFLALLIYFLLRRFSQNSPHKADPSNPSRSHSARIQTFLNLVDEKEDISHKNLKRKVEDISSHAYSRENHLRSISKRVQMGISQEATYG 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi159g00131 931 SMART GluR_14 477 814 IPR001320 GO:0015276|GO:0016020
Sebi159g00131 931 FunFam Glutamate receptor 471 587 - -
Sebi159g00131 931 Gene3D - 755 819 - -
Sebi159g00131 931 Gene3D - 587 719 - -
Sebi159g00131 931 Gene3D - 59 404 - -
Sebi159g00131 931 Gene3D - 471 586 - -
Sebi159g00131 931 SUPERFAMILY Periplasmic binding protein-like II 454 814 - -
Sebi159g00131 931 FunFam Glutamate receptor 156 313 - -
Sebi159g00131 931 SUPERFAMILY Periplasmic binding protein-like I 36 468 IPR028082 -
Sebi159g00131 931 CDD PBP1_GABAb_receptor_plant 42 431 IPR044440 -
Sebi159g00131 931 PIRSF IGluLR_plant 9 929 IPR017103 -
Sebi159g00131 931 CDD GluR_Plant 474 812 - -
Sebi159g00131 931 Pfam Receptor family ligand binding region 59 414 IPR001828 -
Sebi159g00131 931 Pfam Bacterial extracellular solute-binding proteins, family 3 496 813 IPR001638 -
Sebi159g00131 931 FunFam Glutamate receptor 713 816 - -
Sebi159g00131 931 Pfam Ligand-gated ion channel 814 843 IPR001320 GO:0015276|GO:0016020
Sebi159g00131 931 Gene3D - 156 429 - -
Sebi159g00131 931 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 41 868 IPR015683 -
Sebi159g00131 931 FunFam Glutamate receptor 587 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi159g00131 Sebi-Chr159 1432613 1436505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi159g00131 14 898 Ion Channels AT2G17260 61.889 0.0 1145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi159g00131 K05387 - gmx:100793969 1327.77