Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi159g00125 ATGGTTGAAGAAAGAGGCATTGCACATTCCTGCACAGAGTGCGGTAAGAAGTTCTGGTCTTCCAAGGCTCTGTTTGGCCACATGCGATGTCACCCTGAGCGTCAATGGAGAGGGATCAATCCTCCTCCCAATTTCAGAAGACCACAACACCAACAGATAACAATGACTCAAGAGGATCACGAGGTTGCCGCTTGTTTGCTCTTACTTTCAAATGCAAATGAAAAGGGAAAAGGTACTACTACTAGTTGTTATAATTACGTGGTGGAGTCTCCGAGTCAGAGCAATGTTTCCAGCACTCATTTTGAGTGCTCCAGTTGCAACAAGGTCTTTGGATCACACCAGGCTCTTGGAGGACACAGGGCTAGTCACAAGAATGTCAAGGGTTGTTTTGCCAATGCCATAACAACAACTGCTTTTGTTGCTGACCCTATTCCCTTTCCCATCAATGTCATGATGCTTGCAGGTACCACTACTATAGGAGAAGGGGATCCAGATGCAGCAGATGAAAGTGGAGGCCACAAGTGCAGCATATGCCTTAGGGTATTCCCCACTGGTCAAGCCCTTGGTGGTCACAAGAGGTGTCACTGGGAGAAAGGGGATAATGCTGCACCCAAGTCTCTTGTTGACTTGAATTTGCCTCCTCTTGATGGTGATGATCATGATTGTTCCTCTTCCCTTACTCTAGATTTGAGGTTGGGACTCTAA 705 0.4681 MVEERGIAHSCTECGKKFWSSKALFGHMRCHPERQWRGINPPPNFRRPQHQQITMTQEDHEVAACLLLLSNANEKGKGTTTSCYNYVVESPSQSNVSSTHFECSSCNKVFGSHQALGGHRASHKNVKGCFANAITTTAFVADPIPFPINVMMLAGTTTIGEGDPDAADESGGHKCSICLRVFPTGQALGGHKRCHWEKGDNAAPKSLVDLNLPPLDGDDHDCSSSLTLDLRLGL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi159g00125 234 Gene3D Classic Zinc Finger 3 65 - -
Sebi159g00125 234 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Sebi159g00125 234 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 6 234 - -
Sebi159g00125 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Sebi159g00125 234 SMART c2h2final6 173 195 IPR013087 -
Sebi159g00125 234 SMART c2h2final6 9 31 IPR013087 -
Sebi159g00125 234 SMART c2h2final6 101 123 IPR013087 -
Sebi159g00125 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Sebi159g00125 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 195 IPR013087 -
Sebi159g00125 234 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Sebi159g00125 234 SUPERFAMILY beta-beta-alpha zinc fingers 9 123 IPR036236 -
Sebi159g00125 234 ProSitePatterns Zinc finger C2H2 type domain signature. 175 195 IPR013087 -
Sebi159g00125 234 Pfam C2H2-type zinc finger 173 197 - -
Sebi159g00125 234 Pfam C2H2-type zinc finger 100 124 - -
Sebi159g00125 234 Pfam C2H2-type zinc finger 8 33 - -
Sebi159g00125 234 Gene3D Classic Zinc Finger 98 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi159g00125 Sebi-Chr159 1281307 1282011 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi159g00125 7 234 C2H2 Transcription Factor Family AT4G35280 51.452 2.62e-70 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi159g00125 zf-C2H2_6 1.9e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi159g00125 - - gmx:100792631 250.366