Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi159g00117 ATGGAAAAGAGAGGCGCAGTCTCAGATGCTGAGCTTCAAACTGTGTTGGATCCTGCTCAGGTCAGAAGACCTACCCTCTCCTCGTTGCAAATACCAGCATGGTCATTGGATATTGCTTTATCTTCTTTTGCAAAGACGGATGGTCCTTCACCTTCAGTTTCACTGTCAAGTCCTGGTTCAACTGCTAGAGGACTTCCCCCAAGGCCAAATTCAGCTAAAGCCAGACCTTCCATGAGAAGTTTACTTCCTCAGTGGAGCTTAAGGACAAAAGCTTCTCCCCGGGATGTTGAAAGGACAGTTCTTATAGTTCCTGATACTCCCTCGTCAGATGCTCCTTTGGAGAAACCTTCCACTTCAAGGTCCCTGTCTCTTAATAGTAGGGTCATAACACCCCCATCAACAAAAGCTGTACACTCATTACCAGTTACTCCATTTGCAACTTCAGGTGCAGAGAATGTGCATGGAAAACGTCTGGGGTGTGATTCTGGTTTTAGTACAATTGAAATTCAGCAGCATATAACTCGATCATTATCGGTTCCAGTTAATGGCAAAGGCACTAAGTTAAGGCGTACAGATTCTAGGTGCTTGATTCGTGTGATTTCGGCACAACCACATCTTGAAACTGTTGTTGCAACCTCAACTGATGATGCTTCGGTTCCAAAGACCGCTGTTGAAGATGCTAGTGAGGATATTCCAGAGGAAGAAGCAGTGTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGAAATACTCTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCATCAAGAGTGTGCTGTAAAGTGGTTTAGTATTAAAGGAAACAGGACCTGTGATGTCTGCAAGCAGGATGTTCAAAACCTCCCAGTAACACTGTTGAAAATTTATAATCCTCAAACTGCTTCTAGGCAGCCATCAAATGTGCCACAACAGAGAGAAGTAGCATATTACAGGCATGTTTGA 975 0.4421 MEKRGAVSDAELQTVLDPAQVRRPTLSSLQIPAWSLDIALSSFAKTDGPSPSVSLSSPGSTARGLPPRPNSAKARPSMRSLLPQWSLRTKASPRDVERTVLIVPDTPSSDAPLEKPSTSRSLSLNSRVITPPSTKAVHSLPVTPFATSGAENVHGKRLGCDSGFSTIEIQQHITRSLSVPVNGKGTKLRRTDSRCLIRVISAQPHLETVVATSTDDASVPKTAVEDASEDIPEEEAVCRICLVELGEGGNTLKMECSCKGDLALAHQECAVKWFSIKGNRTCDVCKQDVQNLPVTLLKIYNPQTASRQPSNVPQQREVAYYRHV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi159g00117 324 ProSiteProfiles Zinc finger RING-CH-type profile. 230 292 IPR011016 GO:0008270
Sebi159g00117 324 Pfam RING-variant domain 238 285 IPR011016 GO:0008270
Sebi159g00117 324 MobiDBLite consensus disorder prediction 45 124 - -
Sebi159g00117 324 PANTHER OS02G0165000 PROTEIN 19 322 - -
Sebi159g00117 324 MobiDBLite consensus disorder prediction 45 64 - -
Sebi159g00117 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 293 IPR013083 -
Sebi159g00117 324 MobiDBLite consensus disorder prediction 1 23 - -
Sebi159g00117 324 CDD RING_CH-C4HC3_MARCH 238 286 - -
Sebi159g00117 324 SUPERFAMILY RING/U-box 234 289 - -
Sebi159g00117 324 SMART ringv_2 237 286 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi159g00117 Sebi-Chr159 1181412 1183369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi159g00117 215 292 C3H Transcription Factor Family AT2G37950 41.975 2.50e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi159g00117 - - gmx:100789461 455.292