Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi159g00101 ATGGCGGCCATTATTTCACAGAATGCCAACCTCTGTGTGAGTGACTCAGACCCTCTAAACTGGGATTCCGCAGCGAATTCACTCAAGGGTAGCCACTTTGATGAAGTAAAACGCATGGTGGCAGAGTACAGGAAGCCAGTGATCTGTTTAGGTGGGGGGGAGACACTAACTATATCTCAGGTGGCTTCTGTTGCTAACCATAACTCACAAGCTAAGGTTGACCTCTCAGAGTCTGCAAGGGCAGGAGTTGAGGCCAGCTGCGAATGGATCATGGAAAACATTAACAAAGGCACTCCCATTTATGGTGTTACCACTGGCTTTGGTGCTGCCTCTAACAGACAAACCAAACAAGGCATTGCTCTTCAGAAGGAGATGGTTAGGTTTTTAAACTGCGCAATATTTGGATATGAAACAGAGTTGTCTCATACACTGCCTCAGTCAGCAACCAGAGCAGCTATGCTTGTGAGGGTTAATACCCTTCTTCAAGGGTATTCAGGCATTAGATTTGAAATCTTAGAAGCTATCACCAAACTTCTCAACCACAATGTCACCCCCATCTTGCCATTACGTGGTACAATTACTGCTTCTGGTGATCTAATTCCTCTGTCGTACATTGTTGCATTGCTAACCGGTAGGAGAAACTCCAAAGCTGTTGGACCCTCTGGAGAGACCCTTAATGCCAAGGAAGCTTTCCATTTAGCAGGTCTGAATTCTGGGTTCTTTGAGTTGAAGCCAAAGGAAGGCGTTGCCCTTGTAAATGGCACAGCTGTTGGATCTGGTGTAGCTGCAAAGGGGAAGCCAGAATTTACACATCATCTTATACACAAGCTGAAGTACCATCCTGGTCAAATTGAGGCTGCTGCTATTATGGAACATATTTTAGATGGAAGCTCTTATGTCAAAAATGCTAAACTGCAACAGACAGATCCATTGCAGAAGCCTAGAAAAGATCGTTATGCTCTTCAAACTTCTCCTCAGTGGCTTGGTCCACAGATAGAAGTCATCCGGTATTCAACCAGATCAATTGAAAGGGAGATAAATTCAGTCAATGACAATCCTTTGATTGATGTCACAAGGAATAAGGTTCTGAATGGTGGTAATTTCCAAGGCACCCCAATTGGAGTTTCAATGGATAATGCACGTTTAGCTGTAGCTTCAATTGGCAAACTCATCTTTGCCCAATTTACCGAACTAGTCAATGACATTTATAATAATGGGTTACCATCAAATCTCTCTGCTGGTAGAAACCCAAGTCTGGATTATGGTTTTAAGGCATCGGAAGTTGCCATGGCTGCTTATTGTTCTGAACTTCAATATTTAGCAAACCCGGCAACAAGTCATGTGCAAAGTGCAGAGCAGCACAACCAAGATGTGAACTCATTGGGCTTAATTTCTGCCTGGAAAACTGTCGAAGCTGTTGAGATATTGAAGCTCATGTCTTCCACATATTTGGTTGCACTCTGCCAAGCTATTGACTTGAGGCATTTGGAGGAAATTTTTAAAAACACAGTCAGGAACACTGTAAGCAGTGTTGCAAAGCTGACATTAACCAGGGAAGACAAAGAAGAATTTAACACATTTCCACTTTGTGAGAAAGATTTGCTCAAAGTGGTTGATAGAGAATATGTATTCTCTTACATTGATGATCCCTCCAACGTTACGTATCCATTGATGCCAAAACTAAAGCAAGTACTTTATGAGAAAGCACACATCAGTGCCATTAATGACAAGAATGTGAGCTTGTCAATTTTTGAGAAGATTGGAGCTTTTGAGGATGAGCTGAAGTCTCTCTTGCCAAAGGAAATTGAAAGTGCCAGGGTGGCTTATGAGAATGGCAATCCAGCCATTCCGAACAGAATTAAGGAATGTAGGTCATACCCACTATACAAGTTTGTGAGGGAAGAATTAGGGATAGGGTTGCTGACCGGAGATAAGACTCTCTCACCAGATGAGGAATTTGAAAAAGTATTTACAGCCATGTGTCAAGCAAAGATTATTGACCCAATTCTGGAATGTCTTGGAGATTGGAACGGAGTTCCCATCCCAATATAA 2052 0.4254 MAAIISQNANLCVSDSDPLNWDSAANSLKGSHFDEVKRMVAEYRKPVICLGGGETLTISQVASVANHNSQAKVDLSESARAGVEASCEWIMENINKGTPIYGVTTGFGAASNRQTKQGIALQKEMVRFLNCAIFGYETELSHTLPQSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNVTPILPLRGTITASGDLIPLSYIVALLTGRRNSKAVGPSGETLNAKEAFHLAGLNSGFFELKPKEGVALVNGTAVGSGVAAKGKPEFTHHLIHKLKYHPGQIEAAAIMEHILDGSSYVKNAKLQQTDPLQKPRKDRYALQTSPQWLGPQIEVIRYSTRSIEREINSVNDNPLIDVTRNKVLNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDIYNNGLPSNLSAGRNPSLDYGFKASEVAMAAYCSELQYLANPATSHVQSAEQHNQDVNSLGLISAWKTVEAVEILKLMSSTYLVALCQAIDLRHLEEIFKNTVRNTVSSVAKLTLTREDKEEFNTFPLCEKDLLKVVDREYVFSYIDDPSNVTYPLMPKLKQVLYEKAHISAINDKNVSLSIFEKIGAFEDELKSLLPKEIESARVAYENGNPAIPNRIKECRSYPLYKFVREELGIGLLTGDKTLSPDEEFEKVFTAMCQAKIIDPILECLGDWNGVPIPI 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi159g00101 683 CDD PAL-HAL 54 494 IPR001106 -
Sebi159g00101 683 NCBIfam phenylalanine ammonia-lyase 264 673 IPR005922 GO:0005737|GO:0006559|GO:0016841
Sebi159g00101 683 PANTHER HISTIDINE AMMONIA-LYASE 13 683 IPR001106 -
Sebi159g00101 683 FunFam Phenylalanine ammonia-lyase 8 255 - -
Sebi159g00101 683 Gene3D - 497 618 IPR023144 -
Sebi159g00101 683 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 191 207 IPR022313 GO:0016841
Sebi159g00101 683 Gene3D - 8 253 IPR024083 -
Sebi159g00101 683 Gene3D Fumarase/aspartase (Central domain) 262 678 - -
Sebi159g00101 683 Pfam Aromatic amino acid lyase 262 497 IPR001106 -
Sebi159g00101 683 Pfam Aromatic amino acid lyase 56 263 IPR001106 -
Sebi159g00101 683 SUPERFAMILY L-aspartase-like 17 683 IPR008948 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi159g00101 Sebi-Chr159 1092821 1095038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi159g00101 10 683 Monolignol Biosynthesis Gene Families AT2G37040 70.386 0.0 1034
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi159g00101 K10775 - gmx:100787872 1205.28