Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi159g00099 ATGGCGCAATCCAACAAGCAGCTTCCCTGCGACGCCGACGGCCTTTGCATGCTCTGCAAACTCAAACCCTCTCCTTCTGAGACTCTCACTTGCCGGACCTGCATCACTCCCTGGCACGCTCCTTGTCTCCCCATTCCTCCTTCCTCCCTCCTTGATTGGGACTGTCCTGACTGTTCCCAACCGGAAACTCACCATGTCGCCGCCCCTGCTCCCTCCGCCGGCGACCTCGTCTCCGCCATCCGTGCCATTCAGTCCGACACTTCACTCACTGAGAAAGAAAAGGCCAAAAAACGTCAAGAGCTTGTTGGTGGATCCACAAAACCACCTGCAGAAACCAGTAACACTGTCAAGAACGGTTTGCTTGATATTCTTGACGGAAGCTTGAACTGTTCCTTCTGTATGCAGTTGCCTGAGAGACCTGTCACGACGCCTTGTGGTCACAATTTCTGTTTGAAATGCTTTGAAAAATGGATCGGCCAAGGAAAACGCAGTTGCGCGAAATGCCGTAGGGAAATTCCTGTTAAGATGTCGAGCAATCCGCGAATCAATTCGCAGCTCGCCATTGCCATTCGATTCGCCAAAATGGCGAGATCTGGGAACTCAAGTGTTACCACAAACAAGGTTTACCACTTTACTCACAATCAGGATCGTCCAGATAAGGCTTTCACTACTGAGAGAGCTAAGAAGGCTGGGAAGGCCAATGCTTGCAGTGGCAAGATATTTGTAACTGTTCCTCCTGATCATTTTGGACCTATCCCTGCTGAGAATGACCCTACAAGGGACCGTGGTGTCCTTGTTGGGGACACTTGGGAGGATCGGATGGAATGTAGACAGTGGGGTGCTCATCTTCCTCATGTTGCTGGCATTGCTGGCCAGAGTTCTTATGGTGCTCAGTCTGTGGCCCTTTCTGGTGGTTACATTGATGATGAGGATCATGGTGAATGGTTCCTTTATACTGGTAGTGGTGGGAGAGATCTCAGTGGTAACAAAAGGACCAACAAGCAGCAATCCTTTGATCAGAAATTTGAGAATATGAATGAGGCACTGAGATTTAGTTGCCGAAAAGGTTATCCAGTTAGGGTTGTCAGGTCCCATAAGGAGAAACGATCTTCTTATGCACCGGATGCTGGGGTGCGATATGATGGGGTTTATAGAATTGAGAAATGCTGGCGGAAAAATGGAGTACATGGTTGCAAGGTTTGCAGATATTTGTTTGTGAGATGTGACAATGAGCCAGCCCCATGGACTACTGCTGACCGTGGAGATCGACCCCGGCCACTTCCTAAAATTAAAGAGTTGAAGGATGCAATTGACATAACTGAAAGGAAGGAATCTCCATCATGGGATTATGATGAGGAAAAGGGCTGCTGGTTGTGGAAGAAGCCTCCGCCACAAAGCAGAAAAACGGTTAATGTGGTAAATCCTGAGGATGGGACTCATGTAAGGGTCAAGCGGAAATTTAAAGATGTGTCTGTCAAAGAAAGGCTTTTAAGAGAGTTTGGCTGCCAAATCTGTCACAAGGTGATGTCTTTTCCTCTTACTACACCCTGTGCTCACAACTTCTGCAAAGCCTGTCTGGAGGGAGCCTTTTCTGGCCAAAGTTTCATCAGAAAGAGGGCATGTGAAAGTGGACGTACTTTAAGGGCACAGAAGAACATTATGAAATGCCCATCATGTTCAATTGACATAGCTGAGTTTCTTCAGAATCCACAGGTACTTAATGTTGTAAATGTCTATGCTGTTGACATGGTTGGGAGAATTGTTGCAAAAGTTAACAGAGAAATGATGGGTATTATAGAATCACTCCAGCACCAGGTTGAACAGATGGAGGAAAATTCTGAAGAGTTGAGTGATAAAAATGATGAAAATATCAAGAATCTGCATGATGAGGAGGCTGAAGTTTCAAAACCCTGTGATTCAAGTGAAAAAGTTTTGGAGGAAATCAATGACAACGATCTGAATCAGCCACTCAAGCGGAGGAAAAGTTCTGGTGGCACGGTTGTGGTGAACATAGAGGAACATACTGATGAGGCTGAACTAGGAGACGCAGTAAAGGTTTGTAATTAA 2067 0.4649 MAQSNKQLPCDADGLCMLCKLKPSPSETLTCRTCITPWHAPCLPIPPSSLLDWDCPDCSQPETHHVAAPAPSAGDLVSAIRAIQSDTSLTEKEKAKKRQELVGGSTKPPAETSNTVKNGLLDILDGSLNCSFCMQLPERPVTTPCGHNFCLKCFEKWIGQGKRSCAKCRREIPVKMSSNPRINSQLAIAIRFAKMARSGNSSVTTNKVYHFTHNQDRPDKAFTTERAKKAGKANACSGKIFVTVPPDHFGPIPAENDPTRDRGVLVGDTWEDRMECRQWGAHLPHVAGIAGQSSYGAQSVALSGGYIDDEDHGEWFLYTGSGGRDLSGNKRTNKQQSFDQKFENMNEALRFSCRKGYPVRVVRSHKEKRSSYAPDAGVRYDGVYRIEKCWRKNGVHGCKVCRYLFVRCDNEPAPWTTADRGDRPRPLPKIKELKDAIDITERKESPSWDYDEEKGCWLWKKPPPQSRKTVNVVNPEDGTHVRVKRKFKDVSVKERLLREFGCQICHKVMSFPLTTPCAHNFCKACLEGAFSGQSFIRKRACESGRTLRAQKNIMKCPSCSIDIAEFLQNPQVLNVVNVYAVDMVGRIVAKVNREMMGIIESLQHQVEQMEENSEELSDKNDENIKNLHDEEAEVSKPCDSSEKVLEEINDNDLNQPLKRRKSSGGTVVVNIEEHTDEAELGDAVKVCN 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi159g00099 688 Pfam SAD/SRA domain 262 410 IPR003105 -
Sebi159g00099 688 Pfam Zinc finger, C3HC4 type (RING finger) 130 168 IPR018957 GO:0046872
Sebi159g00099 688 Gene3D - 230 425 IPR036987 -
Sebi159g00099 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 195 IPR013083 -
Sebi159g00099 688 ProSiteProfiles YDG domain profile. 259 407 IPR003105 -
Sebi159g00099 688 SMART ring_2 502 559 IPR001841 -
Sebi159g00099 688 SMART ring_2 130 168 IPR001841 -
Sebi159g00099 688 Coils Coil 592 633 - -
Sebi159g00099 688 ProSitePatterns Zinc finger RING-type signature. 517 526 IPR017907 -
Sebi159g00099 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 73 IPR013083 -
Sebi159g00099 688 SUPERFAMILY RING/U-box 483 563 - -
Sebi159g00099 688 SMART G9a_1 245 411 IPR003105 -
Sebi159g00099 688 ProSitePatterns Zinc finger PHD-type signature. 16 58 IPR019786 -
Sebi159g00099 688 MobiDBLite consensus disorder prediction 89 116 - -
Sebi159g00099 688 SUPERFAMILY PUA domain-like 233 426 IPR015947 -
Sebi159g00099 688 CDD RING-HC_ORTHRUS_rpt1 127 173 IPR047498 -
Sebi159g00099 688 Pfam RING-type zinc-finger 502 557 IPR027370 -
Sebi159g00099 688 ProSiteProfiles Zinc finger RING-type profile. 502 560 IPR001841 -
Sebi159g00099 688 SUPERFAMILY RING/U-box 122 176 - -
Sebi159g00099 688 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 230 425 - -
Sebi159g00099 688 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 4 615 IPR045134 -
Sebi159g00099 688 FunFam Predicted protein 92 195 - -
Sebi159g00099 688 ProSiteProfiles Zinc finger RING-type profile. 130 169 IPR001841 -
Sebi159g00099 688 SMART PHD_3 15 59 IPR001965 -
Sebi159g00099 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 482 628 IPR013083 -
Sebi159g00099 688 SUPERFAMILY FYVE/PHD zinc finger 5 61 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi159g00099 Sebi-Chr159 1070839 1074096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi159g00099 7 610 C2H2 Transcription Factor Family AT5G39550 60.714 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi159g00099 K10638 - gmx:100786796 1023.85