Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi159g00095 ATGCCTGTTTTCAAGGTCCCTGGGGTTGCCATGCAAAGACCAGGAGTGGTAGAACAACCTCAGCAGCATGGATTCCTTCCAAATGGATATGTAGAATCTGTGGTTCATGAAAGGTTGAAACGTGTAACAATCAGATGGAAACATTCAGGAACCAATGTTGCTGTTGTAGGATCATGGGACAACTGGAAGACCACGGAGCCCTTGCAGAAAGTGAGAAAAAGAGATTTTGTCATTGTTAAAACACTCCCCATTGGTGTCTATCATTACCGTTTCATTGTAGATGGCTGTTTGAGACATGCTCCAGGAATCCCATCAGATTTTGATGATTCAGGTTATCCCTTCAATATATTGGATTTGCAGGATTATGTCCCAGAAACACAGTTATCTGATTTTGAAGATCCTCCATCACCACCATCAAGTTATGATAACCAATTCTTAAATGAAGATGAGTTCAGTAAGCCTCCACCAGAAATACCACCACAACTGCCATTGACAATAAGACATGAACCTCCACCCTCGAGTAATGCTCTTCTCAGTTTCACACATCTCGAACTGAATCATCTATACATTCACAGAACTGATGGGGAGCAATTTGTGGCACTGCGATCAACTTATAGGTTTCAACACAAATATGTTAAGACAATAGTGTACAAGTCCCTCCCCAGGGAAAGATGA 675 0.4178 MPVFKVPGVAMQRPGVVEQPQQHGFLPNGYVESVVHERLKRVTIRWKHSGTNVAVVGSWDNWKTTEPLQKVRKRDFVIVKTLPIGVYHYRFIVDGCLRHAPGIPSDFDDSGYPFNILDLQDYVPETQLSDFEDPPSPPSSYDNQFLNEDEFSKPPPEIPPQLPLTIRHEPPPSSNALLSFTHLELNHLYIHRTDGEQFVALRSTYRFQHKYVKTIVYKSLPRER 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi159g00095 224 Gene3D Immunoglobulins 34 123 IPR013783 -
Sebi159g00095 224 SUPERFAMILY AMPKBI-like 127 219 IPR037256 -
Sebi159g00095 224 MobiDBLite consensus disorder prediction 132 147 - -
Sebi159g00095 224 SUPERFAMILY E set domains 39 120 IPR014756 -
Sebi159g00095 224 MobiDBLite consensus disorder prediction 127 167 - -
Sebi159g00095 224 MobiDBLite consensus disorder prediction 153 167 - -
Sebi159g00095 224 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 6 222 IPR043554 -
Sebi159g00095 224 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 152 218 IPR006828 GO:0005515
Sebi159g00095 224 Pfam Glycogen recognition site of AMP-activated protein kinase 42 120 IPR032640 -
Sebi159g00095 224 Gene3D - 128 220 - -
Sebi159g00095 224 CDD E_set_AMPKbeta_like_N 42 118 - -
Sebi159g00095 224 SMART AMPKBI_2 134 220 IPR006828 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi159g00095 Sebi-Chr159 1051420 1053466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi159g00095 42 121 Protein tyrosine phosphatase (PTP) family AT3G01510 35.714 7.63e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi159g00095 K07199 - gmx:100801399 285.034