LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi159g00030	ATGCAATCCAAATCTGAAATTGCAAATCAACTGGGGTCTAATCCGCATTCCTTTACGCCTGGCAGTGTTTATTCTGAACCCTGGTGGCGTGGTGTTGGGTACAATCCTGTCTCCCAAGCAATGTCAGGGGCAAATGCATCCAATTCATCCTCGCTTGAATGCCCTAATGGTGATTCAGAATCAAGTGAAGGCCAATCTTTGTCCAATAATGGGCTGAATGAAGAAGATGATGATGCTAATAAAGAATCACAACCTACTGCTCCTAATCAATCAGGGAATTACGGACAAGAACACCAAGGGATGCAGCATGGTTCATCATCTGCACCTTCTGTGCGTGATGGATGTCTTGCGCAGGCTCCACAACTGGAACTTGTTGGTCATTCAATTGCATGCGCTTCAAATCCTTATCAGGATCCATACTATGGGGGCATGATGGCAGCATATGCACACCAGCAGTTGGGATATGCTCCTTTTATTGGAGCGCCTCATGCCAGAATGGCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTGAGACGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGTTGATAAAAGTCAGAAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGAGCAAGGGGAAGTGGAGGACGTTTTGCAAAGAAAACTGAAGTTGAGAGCAAGGAAAGGGATATGGGTAGTGGTTCAGTTCCATCAGCACAGTCAATTAGTTCATCTGGTTCTGAAGCTTTACCCTCTGACTCTGCTGAGACCCGGAATTCTCCAAGTGTGCAGCCAAATGCAAGAGAATCTAAAGTGAATAAGAGATTTCAAGAACTCAACTATGCAAGTGGTAGTAACTCCTACCACCATAATCATAATGGTTTACAAATGGCTTCAACATTTTGTTTGCACTCAGGTGAAAGAGTAGAAGAAGGGGACTGTTCAGGGCAGCAACGGGGGAGCATCTCATCTGAGCACACATCACAGAGGCGTCTTGCTATTCAGTAA	1044	0.4521	MQSKSEIANQLGSNPHSFTPGSVYSEPWWRGVGYNPVSQAMSGANASNSSSLECPNGDSESSEGQSLSNNGLNEEDDDANKESQPTAPNQSGNYGQEHQGMQHGSSSAPSVRDGCLAQAPQLELVGHSIACASNPYQDPYYGGMMAAYAHQQLGYAPFIGAPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTEVESKERDMGSGSVPSAQSISSSGSEALPSDSAETRNSPSVQPNARESKVNKRFQELNYASGSNSYHHNHNGLQMASTFCLHSGERVEEGDCSGQQRGSISSEHTSQRRLAIQ	347

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi159g00030	347	MobiDBLite	consensus disorder prediction	212	227	-	-
	Sebi159g00030	347	MobiDBLite	consensus disorder prediction	320	347	-	-
	Sebi159g00030	347	ProSiteProfiles	NF-YA/HAP2 family profile.	173	233	IPR001289	GO:0003700\|GO:0006355
	Sebi159g00030	347	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	175	230	IPR001289	GO:0003700\|GO:0006355
	Sebi159g00030	347	MobiDBLite	consensus disorder prediction	83	112	-	-
	Sebi159g00030	347	MobiDBLite	consensus disorder prediction	328	347	-	-
	Sebi159g00030	347	MobiDBLite	consensus disorder prediction	212	284	-	-
	Sebi159g00030	347	Gene3D	-	173	235	-	-
	Sebi159g00030	347	MobiDBLite	consensus disorder prediction	1	21	-	-
	Sebi159g00030	347	MobiDBLite	consensus disorder prediction	245	284	-	-
	Sebi159g00030	347	ProSitePatterns	NF-YA/HAP2 subunit signature.	178	198	IPR018362	GO:0003677\|GO:0016602
	Sebi159g00030	347	SMART	cbf3	172	233	IPR001289	GO:0003700\|GO:0006355
	Sebi159g00030	347	MobiDBLite	consensus disorder prediction	228	242	-	-
	Sebi159g00030	347	PRINTS	CCAAT-binding transcription factor subunit B signature	207	230	IPR001289	GO:0003700\|GO:0006355
	Sebi159g00030	347	PRINTS	CCAAT-binding transcription factor subunit B signature	176	198	IPR001289	GO:0003700\|GO:0006355
	Sebi159g00030	347	MobiDBLite	consensus disorder prediction	1	112	-	-
	Sebi159g00030	347	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	15	289	IPR001289	GO:0003700\|GO:0006355
	Sebi159g00030	347	MobiDBLite	consensus disorder prediction	38	73	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi159g00030	Sebi-Chr159	422255	424446	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi159g00030	1	272	CCAAT-HAP2 Transcription Factor Family	AT5G12840	56.115	7.48e-90	269

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Sebi159g00030		CBFB_NFYA	1.6e-26	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi159g00030	K08064		-	gmx:100808378	506.523