Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi159g00008 ATGGGAAGGGCTTCTTGCTGTGACAAAGCCAACGTCAAGAAAGGACCATGGTCTCTTGAAGAAGATGCCAAACTCAAGTCTTACATTGAGCAGCATGGTACCAGTGGTAATTGGATTGCCCTGCCACAGAAGATAGGCATGCTAATTCATCAATAA 156 0.4487 MGRASCCDKANVKKGPWSLEEDAKLKSYIEQHGTSGNWIALPQKIGMLIHQ 51
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi159g00008 51 SUPERFAMILY Homeodomain-like 8 46 IPR009057 -
Sebi159g00008 51 CDD SANT 16 38 IPR001005 -
Sebi159g00008 51 PANTHER OS09G0431300 PROTEIN 1 47 - -
Sebi159g00008 51 Gene3D - 5 47 - -
Sebi159g00008 51 ProSiteProfiles Myb-like domain profile. 9 51 IPR001005 -
Sebi159g00008 51 Pfam Myb-like DNA-binding domain 14 46 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi159g00008 Sebi-Chr159 97629 97784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi159g00008 1 47 MYB Transcription Factor Family AT3G49690 87.234 1.87e-24 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi159g00008 Myb_DNA-binding 3.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi159g00008 K09422 - gmx:100812816 96.6709