Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi158g00019 ATGGCTAGTGATGATGAGCATCTGGCCCTGCAGGATATTCTGTCTCTTTCCTTCATGTCACCCTCTTCTTCCTTACTAAAGCTCAAGCATAAGCCTCAATTCAGAGATGCGCTGAAACACTTCCTTTTGTGTTCTGCGGGGCCTTTTCCTTCCTTATGTCTTGTTGCGGGACGCAGCTCCAAGGCTAGGGTTTTCACTGCCTTAGCAGCGGTGGTGGAGCAAGAACACGTGGAGCGAGAAAATGATGAAGAGGAAGAGCAATTTAAGCAGACAAGAGCTACCGAAGTGTATGTGTGCAACCTTCCAAGAAGCTGTGACACAGAGCAACTACTTCACATGTTCAAGCCTCACGGATCCATTCTATCTATAGAGGTTTTCCGGAATCCGGAGACTGGTGAAAGTAAAGGGAGTGCTTATGTCACATTAGGATCTATTAACTCGACAAAAAATGCAATTGTTATTAGATGGAATGGTTAG 477 0.4549 MASDDEHLALQDILSLSFMSPSSSLLKLKHKPQFRDALKHFLLCSAGPFPSLCLVAGRSSKARVFTALAAVVEQEHVERENDEEEEQFKQTRATEVYVCNLPRSCDTEQLLHMFKPHGSILSIEVFRNPETGESKGSAYVTLGSINSTKNAIVIRWNG 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi158g00019 158 SMART rrm1_1 95 157 IPR000504 GO:0003723
Sebi158g00019 158 SUPERFAMILY RNA-binding domain, RBD 91 153 IPR035979 GO:0003676
Sebi158g00019 158 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 158 IPR000504 GO:0003723
Sebi158g00019 158 Coils Coil 74 94 - -
Sebi158g00019 158 Gene3D - 58 155 IPR012677 -
Sebi158g00019 158 PANTHER OS02G0815200 PROTEIN 25 152 - -
Sebi158g00019 158 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 152 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi158g00019 Sebi-Chr158 753310 754099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi158g00019 74 152 Eukaryotic Initiation Factors Gene Family AT4G34110 31.395 9.30e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi158g00019 - - gsj:114400287 117.857