Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi158g00006 ATGGATCGTTCTGCGACCACTGTTGGACCAGGAATGGATATACCGATCATGCATGACAGTGACAGGTATGAGCTGGTCCGTGATATTGGGTCTGGGAATTTTGGGGTGGCCAGGCTCATGAGAGACAAGCACACTGATGAGCTTGTTGCTGTCAAGTATATTGAGAGAGGTGATAAGATAGATGAAAATGTACAAAGGGAAATTATAAATCACAGATCACTGAGGCATCCCAATATTGTTAGGTTCAAGGAGGTCATACTGACCCCTACACATTTAGCTATTGTCATGGAATATGCTTCTGGCGGAGAGCTATTTGAACGAATATGCAATGCAGGACGGTTCAGTGAGGATGAGGCACGCTTCTTCTTCCAACAACTTATATCTGGGGTTAGCTACTGTCATGCAATGCAAGTATGCCATCGTGACTTGAAGTTAGAGAACACATTGCTGGATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGTCCTCAGTTCTGCATTCACAACCAAAATCTACAGTCGGTACCCCCTGCATACATTGCTCCTGAAGTTTTGCTAAAGAAGGAATATGATGGCAAGATTGCAGATGTGTGGTCTTGTGGGGTGACCTTATATGTCATGTTGGTGGGTGCATATCCTTTCGAGGATCCAGAGGAACCTAAAAATTTCCGGAAGACAATTCATAGGATTTTGAAAGTCCAGTACTCAATTCCTGATTATGTCCATATATCACCGGAGTGCCGTCATCTGATCTCAAGGATCTTTGTTGCAGACCCTGCACAGAGAATAAATATTCCTGAAATTAGAGAACACGAGTGGTTTTTGAAGAACCTTCCAGCTGATCTCATGGTTGATAATACAATGAACAACCAATTTGAGGAGCCTGATCAACCAATGCAGAGCATGGAAGAAATCATGCAGATAATTAGCGAGGCTACAATTCCTGCAGCTGGAACTCAGTCTCTCAACCAGTATCTTACTGGTAGTTTGGATATCGACGACATGGACGAGGACCTAGAGACAGATCCCGACCTTGATATTGATAGCAGTGGAGAAATAGTTTATGCAATGTAA 1080 0.4333 MDRSATTVGPGMDIPIMHDSDRYELVRDIGSGNFGVARLMRDKHTDELVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGPQFCIHNQNLQSVPPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILKVQYSIPDYVHISPECRHLISRIFVADPAQRINIPEIREHEWFLKNLPADLMVDNTMNNQFEEPDQPMQSMEEIMQIISEATIPAAGTQSLNQYLTGSLDIDDMDEDLETDPDLDIDSSGEIVYAM 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi158g00006 359 SUPERFAMILY Protein kinase-like (PK-like) 15 312 IPR011009 -
Sebi158g00006 359 FunFam Serine/threonine-protein kinase SRK2E 99 284 - -
Sebi158g00006 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Sebi158g00006 359 Pfam Protein kinase domain 23 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi158g00006 359 FunFam Serine/threonine-protein kinase SRK2E 15 98 - -
Sebi158g00006 359 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Sebi158g00006 359 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Sebi158g00006 359 ProSiteProfiles Protein kinase domain profile. 23 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi158g00006 359 SMART serkin_6 23 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi158g00006 359 Gene3D Transferase(Phosphotransferase) domain 1 99 284 - -
Sebi158g00006 359 PANTHER SERINE/THREONINE KINASE 22 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi158g00006 Sebi-Chr158 473956 477842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi158g00006 22 287 CBL-interacting serine-threonine protein kinases AT5G25110 43.728 7.24e-67 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Sebi158g00006 Pkinase 1.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi158g00006 K14498 - gmx:100804702 658.677