Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi157g00075 ATGGATTCCATCTCCCTCGAACGCGAGCGCGGCATCACCATTGCTTCCAAGGTTACATCTGTTTCGTGGAAAGAAAACGAGCTGAACATGGTTGATACTCCTGGACATGCTGATTTTGGTGGTGAGGTTGAACGTGTTGTTGGCATGGTTGAGGGAGCTATTTTGGTTGTTGATGCTGGGGAGGGTCCACTTGCGCAGACAAAATTTGTTCTTGCAAAAGCATTGAAGTATGGGTTGCGTCCTATTCTTCTTTTAAACAAAGTAGACCGACCTTCAGTTACTGAGGAGACATGTGATGAAGTTGAGAGTCTGGTGTTTGATCTATTTGCCAACCTAGGTGCTACAGAGGAGCAACTCGACTTTCCAGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCATCCACCACCTTTACCAAGGATCCTCCTGCTGAGGCCAAAAATATGTCACAGTTGCTTGATTCCATTGTAACGCATGTCCCGCCACCAAATGCGAGCACTGATGCACCTTTCCAAATGCTGGTTTCAATGATGGAACGGGACTTCTATCTTGGGCGAATTTTGACTGGACGAGTGTATTCTGGGGTTGTTCGTGTTGGTGATAGGGTTCATGGACTACGTAATAAAGATTCTGGTGCTGAAAAGATTGAAGATGGAAAGGTGGTGAAACTGATGAAAAAGAAGGGTACAAACATGGTTCTAACTGATTGTGCTGGAGCTGGTGATATAATTTCTGTTGCTGGCTTGGCAAGTCCATCAATAGGCCATACTGTGGCAACTGTGGAGGTTATGTCTGCACTGCCCACTGTTGAATTGGATCCCCCAACTATTTCCATGACTTTTGGTGTAAATGATTCCCCATTAGCTGGTCGTGATGGCACTCATTTGACTGGGGGAAGAATTGGCGAACGACTGATGGCTGAAGCTGAAACCAACCTTGCCATAAATGTGCTTCCAGCCTTATCAGAATCGTATGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGGTATTTTAATTGAGAATATGAGGCGTGAAGGATTCGAGTTATCTGTCTCTCCACCCAAAGTCATGTATAAAACTGAAAATAGTCAGAAACTTGAGCCAATAGAAGAGGTTACAATCGAGGTAAATGATGAGCACGTTGGCTTGGTAATGGAAGCCTTGTCTCATAGACGAGCTGAGGTTACTGACATGGGTCCTGTCTCAGGAACTGTTGGTCGAACTAGATTGTCTTTGACTTGTCCATCAAGGGGCCTGGTTGGTTACAGGAGTGTGTTCAGCAGTGACACACGTGGAACTGGGTTCATGCATCGTGCTTTCTTTGCGTATGAGAAATTTCGAGGCCCTCTCGGCAATGTTAGGAAAGGAGTCCTGGTATCAATGGGTTATGGTACGATCACAGCTCATGCATTGATGAGCTTAGAAGCTCGTGGGATTCTTTTTGTGACTCCTGGAATGGAGGCATATGATGGAATGATTATTGGAGAACATTCACGGGATACAGATCTTGATGTGAATCCTGTGAGAGCTAAAGAACTTACAAATGTGCGTGCTGCTTCCAAGGATGAGAATGTGAAGCTGTCCCCTCCTCGTCTTATGACTCTTGAAGAAGCTATAGGATATGTAGCTTCAGATGAGCTTATTGAGGTTACACCAAAGGCCATCCGGTTGCGGAAGAAATACCTTGATGTCAACAAACGTAAAGCCATGAGTAAAAGGCCAAAGGAATGA 1728 0.452 MDSISLERERGITIASKVTSVSWKENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPSVTEETCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTFTKDPPAEAKNMSQLLDSIVTHVPPPNASTDAPFQMLVSMMERDFYLGRILTGRVYSGVVRVGDRVHGLRNKDSGAEKIEDGKVVKLMKKKGTNMVLTDCAGAGDIISVAGLASPSIGHTVATVEVMSALPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGRIGERLMAEAETNLAINVLPALSESYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENSQKLEPIEEVTIEVNDEHVGLVMEALSHRRAEVTDMGPVSGTVGRTRLSLTCPSRGLVGYRSVFSSDTRGTGFMHRAFFAYEKFRGPLGNVRKGVLVSMGYGTITAHALMSLEARGILFVTPGMEAYDGMIIGEHSRDTDLDVNPVRAKELTNVRAASKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKKYLDVNKRKAMSKRPKE 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi157g00075 575 Gene3D Elongation Factor G (Translational Gtpase), domain 3 275 559 - -
Sebi157g00075 575 CDD BipA_III 274 351 IPR047043 -
Sebi157g00075 575 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 2 17 IPR031157 -
Sebi157g00075 575 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 172 IPR027417 -
Sebi157g00075 575 Gene3D - 357 451 - -
Sebi157g00075 575 Gene3D Translation factors 164 268 - -
Sebi157g00075 575 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 163 IPR000795 GO:0003924|GO:0005525
Sebi157g00075 575 FunFam GTP-binding protein TypA 275 384 - -
Sebi157g00075 575 PRINTS GTP-binding elongation factor signature 9 17 IPR000795 GO:0003924|GO:0005525
Sebi157g00075 575 PRINTS GTP-binding elongation factor signature 29 39 IPR000795 GO:0003924|GO:0005525
Sebi157g00075 575 PRINTS GTP-binding elongation factor signature 45 56 IPR000795 GO:0003924|GO:0005525
Sebi157g00075 575 PRINTS GTP-binding elongation factor signature 81 90 IPR000795 GO:0003924|GO:0005525
Sebi157g00075 575 Gene3D - 1 163 IPR027417 -
Sebi157g00075 575 NCBIfam translational GTPase TypA/BipA 1 567 IPR006298 GO:0003924|GO:0005525
Sebi157g00075 575 FunFam GTP-binding protein TypA 452 538 - -
Sebi157g00075 575 Gene3D bipa protein 452 567 IPR042116 -
Sebi157g00075 575 Pfam Elongation factor Tu GTP binding domain 1 160 IPR000795 GO:0003924|GO:0005525
Sebi157g00075 575 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 137 - -
Sebi157g00075 575 NCBIfam small GTP-binding protein domain 8 107 IPR005225 GO:0005525
Sebi157g00075 575 FunFam GTP-binding protein TypA 357 451 - -
Sebi157g00075 575 SUPERFAMILY EF-G C-terminal domain-like 366 482 IPR035647 -
Sebi157g00075 575 SUPERFAMILY Translation proteins 112 267 IPR009000 -
Sebi157g00075 575 CDD BipA_TypA_C 366 446 IPR035651 -
Sebi157g00075 575 Pfam Elongation factor G C-terminus 364 447 IPR000640 -
Sebi157g00075 575 CDD BipA_TypA_II 170 267 IPR047042 -
Sebi157g00075 575 SUPERFAMILY EF-G C-terminal domain-like 272 355 IPR035647 -
Sebi157g00075 575 FunFam Elongation factor family protein 164 268 - -
Sebi157g00075 575 Pfam Elongation factor Tu domain 2 184 257 IPR004161 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi157g00075 Sebi-Chr157 1601810 1615221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi157g00075 1 90 Eukaryotic Initiation Factors Gene Family AT3G22980 43.333 1.56e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi157g00075 K06207 - gmx:100782425 1078.93