Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi157g00061 ATGGTCTCTGTTATTTTCTTCTCCCTTTACCTCTACACAAAGTGTGTCCAGATAAGACGCCAATCTCATCGCAGAGCCGCCATTCGCAGAAGACTCGACCTTGCCCTGCAGCTTTATCAGCAGCACATGGAGGAACCACCCACCATAGGCCTTGACCCTCCAATCATCGCGGCTTTACCCGCCTTCATTGTCGAATCGAAGGTTCGAGAAGATGGTGGTGGTGGTGTGATGGATTGTGCTGTTTGCTTGAGTGCTTTAGAAGATGAAGAAATGGCCAAGTTGCTTCCTAACTGCAAGCATTATTTCCATGTTGCTTGTATAGATACTTGGTTGGCTTTGCATTGCACGTGCCCCTTGTGTCGAACCGCGGTCCAACCACGGCTTGAGCCGCACCTCCGTGAGGGTCCCACTGCACTGGCTCTTGATGTTGCACCCTTGGAATCGGTGGTTCTGGAAGAAACTAATTCTGATGGTGATCATGGTGGTGTTGGTGAGTCGCCCAGAATTGATGGTGATGGTTCGAATTCAAGGTTGGGTTCGTTCAGAAGGGTTCTCAGTAGGGATAGATCGTCAAGAAGAATAGCCCAAGTCCAACCGTCTGATGTTCATCAAGATTTGGAGCGACAGACAGTGAATTTGTAG 642 0.4938 MVSVIFFSLYLYTKCVQIRRQSHRRAAIRRRLDLALQLYQQHMEEPPTIGLDPPIIAALPAFIVESKVREDGGGGVMDCAVCLSALEDEEMAKLLPNCKHYFHVACIDTWLALHCTCPLCRTAVQPRLEPHLREGPTALALDVAPLESVVLEETNSDGDHGGVGESPRIDGDGSNSRLGSFRRVLSRDRSSRRIAQVQPSDVHQDLERQTVNL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi157g00061 213 SMART ring_2 79 120 IPR001841 -
Sebi157g00061 213 CDD RING-H2_EL5-like 78 121 - -
Sebi157g00061 213 MobiDBLite consensus disorder prediction 191 213 - -
Sebi157g00061 213 SUPERFAMILY RING/U-box 64 127 - -
Sebi157g00061 213 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 2 202 - -
Sebi157g00061 213 ProSiteProfiles Zinc finger RING-type profile. 79 121 IPR001841 -
Sebi157g00061 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 127 IPR013083 -
Sebi157g00061 213 FunFam E3 ubiquitin-protein ligase ATL6 39 127 - -
Sebi157g00061 213 Pfam Ring finger domain 78 121 IPR001841 -
Sebi157g00061 213 MobiDBLite consensus disorder prediction 154 178 - -
Sebi157g00061 213 MobiDBLite consensus disorder prediction 190 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi157g00061 Sebi-Chr157 1211684 1212325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi157g00061 10 209 C3H Transcription Factor Family AT2G42350 44.118 2.99e-41 137