Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi157g00048 ATGGAAATGGAAGCATTTAATTGGGGCTCTGGCATTCATGGAGATGCCATTACTGATGATTTTCAAGTAAACAATGCGGTAATTGGAAGTGGGTATGGTTCATCTTTCTCCCTGATTTTGGATAGGGAGAGAGGGGAGCTTGTGGAGGCGCCTTCCAAATTGGAACGAAAGTGTGTGTCCACTGAGAGAACCACTGAAGCTTTGAAGAGCCATAGTGAGGCAGAGAGGAGGAGGAGAGCAAGGATTAATGCACATCTTGATACACTTCGAAGTGTGATTCCAGGTGCTAATAAGATGGATAAAGCATCATTACTTGGTGAGGTTCTTAGTCATTTGAAAGAGCTGAAAAGGAATGCAGCACAAGCTTGTGAAGGTGTAATGATACCAAAGGACAGCGATGAAATAAGTGTTGAAGAACAAGAGGGTGGGTTCAATGGCTTTCCTTATTCAATTAGAGCATCACTATGTTGTGAATATAAACCCGGGTTATTGTCTAATATAAGACAAGCACTAGATGCTCTTCATCTTATGATAATAAAGGCTGATATTGCAACATTGGGAGGCAGAATGAAGAATGTCTTTGTGATAATTAGCTGCAAAGAACAGAACTTTGAAGATGCTGAATACCGTCAGTTTCTTGCTGGCTCTGTTCATCAAGCTCTTAGATCTGTACTCAATAGGTTTTCTGTTTCAGAGGACATCTTAGGAACCAGAAAAAGGAGGAGGATTTCTATATTCAGTTCAACATTTTTAGAAGATATCTTGTAA 768 0.4023 MEMEAFNWGSGIHGDAITDDFQVNNAVIGSGYGSSFSLILDRERGELVEAPSKLERKCVSTERTTEALKSHSEAERRRRARINAHLDTLRSVIPGANKMDKASLLGEVLSHLKELKRNAAQACEGVMIPKDSDEISVEEQEGGFNGFPYSIRASLCCEYKPGLLSNIRQALDALHLMIIKADIATLGGRMKNVFVIISCKEQNFEDAEYRQFLAGSVHQALRSVLNRFSVSEDILGTRKRRRISIFSSTFLEDIL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi157g00048 255 SMART finulus 72 121 IPR011598 GO:0046983
Sebi157g00048 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 121 IPR036638 GO:0046983
Sebi157g00048 255 Pfam Helix-loop-helix DNA-binding domain 70 115 IPR011598 GO:0046983
Sebi157g00048 255 Gene3D - 60 123 IPR036638 GO:0046983
Sebi157g00048 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 115 IPR011598 GO:0046983
Sebi157g00048 255 PANTHER TRANSCRIPTION FACTOR BHLH30 43 244 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi157g00048 Sebi-Chr157 893956 895532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi157g00048 39 244 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 39.545 1.46e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi157g00048 HLH 2.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi157g00048 - - gmx:100788819 403.675