Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sebi156g00052 | ATGCAGATTGATCCCGTTCCAGGCCAAGTTTCTGCACTGGTTCTGTGTCATACAAGAGAATTAGCTTACCAGATATGCCATGAGTTTGAGAGGTTCAGCACCTACTTACCTGATCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGTTGAGAAATGAGTGCCCTCATATTGTTGTTGGAACGCCTGGAAGAATACTAGCATTGGCCAGGGATAAGGACCTTTCTTTGAAGAATGTCAGGCATTTCATTTTAGATGAATGTGATAAAATGCTGGAATCGCTGGACATGCGGAAAGATGTTCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAGGCCAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAAAACCGGAAGTTGAATGACCTTCTTGATGCACTAGACTTCAACCAAATTGTTATCTTTGTTAAAAGCGTTAGTAGAGCAGCCGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCACTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGTTATAAAGGTTTCAAGGAGGGGCATTCAAGGATTCTTGTTGCAACAGATTTGGTTGGCAGGGGTATTGATATTGAACGTGTCAATATTGTTATTAACTATGACATGCCTGATTCTGCAGATACATACTTGCATAGGGTTGGCCGAGCTGGAAGATTTGGCACCAAGGGCCTTGCAATCACATTCGTTTCATGTTCTACTGATGTTGATGTTCTCAACAATGTTCAGTCAAGGTTTGAGGTCGATATAAAGCAGCTTCCGGAGCAGATTGATACCTCTACCTACATGCCATCGTAG | 969 | 0.4221 | MQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQIVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHSRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS | 322 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sebi156g00052 | 322 | Pfam | DEAD/DEAH box helicase | 10 | 131 | IPR011545 | GO:0003676|GO:0005524 | |
Sebi156g00052 | 322 | Pfam | Helicase conserved C-terminal domain | 171 | 278 | IPR001650 | - | |
Sebi156g00052 | 322 | Gene3D | - | 1 | 153 | IPR027417 | - | |
Sebi156g00052 | 322 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 157 | 318 | IPR001650 | - | |
Sebi156g00052 | 322 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 10 | 296 | - | - | |
Sebi156g00052 | 322 | SMART | helicmild6 | 197 | 278 | IPR001650 | - | |
Sebi156g00052 | 322 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 145 | IPR014001 | - | |
Sebi156g00052 | 322 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 10 | 292 | IPR027417 | - | |
Sebi156g00052 | 322 | CDD | SF2_C_DEAD | 158 | 287 | - | - | |
Sebi156g00052 | 322 | Gene3D | - | 154 | 321 | IPR027417 | - | |
Sebi156g00052 | 322 | FunFam | DEAD-box ATP-dependent RNA helicase | 154 | 322 | - | - | |
Sebi156g00052 | 322 | SMART | ultradead3 | 1 | 161 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sebi156g00052 | Sebi-Chr156 | 867324 | 871793 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sebi156g00052 | 2 | 322 | Eukaryotic Initiation Factors Gene Family | AT5G11170 | 91.277 | 0.0 | 618 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sebi156g00052 | K12812 | - | gmx:100808957 | 634.409 |