Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi156g00052 ATGCAGATTGATCCCGTTCCAGGCCAAGTTTCTGCACTGGTTCTGTGTCATACAAGAGAATTAGCTTACCAGATATGCCATGAGTTTGAGAGGTTCAGCACCTACTTACCTGATCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGTTGAGAAATGAGTGCCCTCATATTGTTGTTGGAACGCCTGGAAGAATACTAGCATTGGCCAGGGATAAGGACCTTTCTTTGAAGAATGTCAGGCATTTCATTTTAGATGAATGTGATAAAATGCTGGAATCGCTGGACATGCGGAAAGATGTTCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAGGCCAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAAAACCGGAAGTTGAATGACCTTCTTGATGCACTAGACTTCAACCAAATTGTTATCTTTGTTAAAAGCGTTAGTAGAGCAGCCGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCACTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGTTATAAAGGTTTCAAGGAGGGGCATTCAAGGATTCTTGTTGCAACAGATTTGGTTGGCAGGGGTATTGATATTGAACGTGTCAATATTGTTATTAACTATGACATGCCTGATTCTGCAGATACATACTTGCATAGGGTTGGCCGAGCTGGAAGATTTGGCACCAAGGGCCTTGCAATCACATTCGTTTCATGTTCTACTGATGTTGATGTTCTCAACAATGTTCAGTCAAGGTTTGAGGTCGATATAAAGCAGCTTCCGGAGCAGATTGATACCTCTACCTACATGCCATCGTAG 969 0.4221 MQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQIVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHSRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi156g00052 322 Pfam DEAD/DEAH box helicase 10 131 IPR011545 GO:0003676|GO:0005524
Sebi156g00052 322 Pfam Helicase conserved C-terminal domain 171 278 IPR001650 -
Sebi156g00052 322 Gene3D - 1 153 IPR027417 -
Sebi156g00052 322 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 157 318 IPR001650 -
Sebi156g00052 322 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 10 296 - -
Sebi156g00052 322 SMART helicmild6 197 278 IPR001650 -
Sebi156g00052 322 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 145 IPR014001 -
Sebi156g00052 322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 292 IPR027417 -
Sebi156g00052 322 CDD SF2_C_DEAD 158 287 - -
Sebi156g00052 322 Gene3D - 154 321 IPR027417 -
Sebi156g00052 322 FunFam DEAD-box ATP-dependent RNA helicase 154 322 - -
Sebi156g00052 322 SMART ultradead3 1 161 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi156g00052 Sebi-Chr156 867324 871793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi156g00052 2 322 Eukaryotic Initiation Factors Gene Family AT5G11170 91.277 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi156g00052 K12812 - gmx:100808957 634.409