Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi156g00042 ATGGATGAATTTTGTGAAGGTTCATGTGTTAACCTTGATGACGATAATATAGATATTAATGTTACTGGTGATGAATTTGATGTAAACCATAGTGAAGATGAAAATGATTCGGGTGGTCCTAGTGTGGAGGAAGAGTTAGGTAGAATGGATCATAGAGGTAAAAGAATGGAAGATTTGACTCCTGTTGATATTCGAAACATGGAGTTTGCTAGTGAAGAGCATGGGGAGATATTTTATAGGGCATATGCAAAACGTCATGGATTTGTTGTTAGAAAGGATGAGATTGATCGGGACATTAAGGGCAATGTTATTATGCGTCAGTTTGTTTGCAAGAAAGAGGGTAGTAGGAACAAAAAACATTTGATGAGGGTGGATAGGAAAAAAGAACATAGGCCATTAACGCGTTTGGATTGTCAAGCTAAGATACGAATTCGCTTAGATTATAAGACAGATAAATGGAAAGTGGTTTCTTTTGTGGAGACCCACAATCATGAGCTTACCCCTTCTACTTTTGTGCACTTACTACCTAGTAATAGAGGGTTGAATAATGTTGATAAAGCCCAAGTAGGGAGGTTGCATGCATATGGTGTTAGAACGTGTCACATAATGGGGTACATGCTAGATCAAAAAGGGGGATATGGTTCCCTTGGGTTTTGTAGAAAGGATCTGTATAATTATATTGAACGACAGAAGCTAGAAAAGATTAAAGATGGGGATGCACATTCTGCCTTATGTTACATACAAGCAAAGGCAAACAATGATCCCACGTTTCGGGCTAGTTTCCTTGCTTCCGAGGACGCTGCAGTAGTTACAGATGGAGATAGTAGTATGAGAGAAGCTAGCAAGCAGGTAGCCATGTATTCTAATTTCACTGAGGATCAATTTGAATTATTTTGGAAGCGAATGGTGGCAAAGCATGGACTTGTAGGAAACAAGTGGGTGTCAAAAATCTATGAGAATAGATCATTGTGGGCCACTGCTTATTTCCGAGATAAATTTTTTGGCCGTATTAGAACAACATCACAGTGTGAGGCTATTAATTCCCTGGTGAAGGCATATGTTAATAAAAAAGATACCATTGTTGAATTCATCAATAGGTTTGAGAAAGTGTTGAGAGAATATAGGAACAATGAGATGATTGCAGATTTCAAAAATCTATTTACGGAGCCAGTCTTAACTACCTCTCTTCGCAAAATTGAGAGTGAGGCGTCAAAAATATTCACATTAGAGATTTTTCGGGAAGTGAAATCTGAGATTGAGGTTGCAGGTGCTTTGAATGTAAATGAACGTCTTGATCAGGGAGATAAATTGATTTTTAAGATGAGCCATTACTGTAATCGCGGAAGTGAATTTCAGGTTGAGTATGATGTAATGAATTCAAAATTTGTATGTGAATGTAGACTGTTTGAGAGTCGAGGAATCCCTTGTTCTCATATTATATGTGTCATTAAAAATGAGAACATGCAAACTATTCCAAGTTCTTTGATTGTGAGGCGTTGGACAAAGAAATGCAAGAGTGATCTTATTTCTTCATATCAGTCAGAAGATGTGGATAATGATGTCATGAAAGAAGCACATTTAGGGGCTGTAGGTGGAGCATTTCAGAGGCTGGGGTTACAAACCTCATCTGAAAAGATTGTCAAAGATCCAGCAGTGGTGAAAACTAAAGGAGCACCGCCTAAAAGAAAGGATCAGCAAAAGATGGATGATGAGAATGAGGATGAAGGAAACATATCATTAGATGAAGTCAATGTTGATGGCATGGAGCCAAGTGACCAAACTCAAAGACTAAACAATAATGAAGTGAACGTGAAAATTAGTGGTAGACACAAAGAGAAGGAGAAGGATTGCACCCAAGATGTGGAAGTGAAAGTTAGTGGTACTCATGAAGGGAAGGAGAAGGGATGCACCCAACAAGTGGAAGTGAAAGTCAGTGGTAGTCATGATGGGAAGGCAAGGGAATGCACACAAAATGTTAGTTTGAATCATAATGTGGGTAATAAAGGGAAGGAAAAGGAGAAAATTTGTCCTATTGCTCCTTCTTTTATGCGCCCCTTTCACAACTATATATTTTGTCCTGGTATGCCAAGCCAAATGATGCATATGCCCCATCCTCAGTACGGTTATGTTCCTATGTACCCAACCGGTTATCCCATGGTTTACCCTAATATGGTTATGCAAAACCCACAGTGGTTTTACAGACTGATCACACACACTGGTCTGGAGCTAGCTCGCCTCTTCAGGTTGTAG 2250 0.3911 MDEFCEGSCVNLDDDNIDINVTGDEFDVNHSEDENDSGGPSVEEELGRMDHRGKRMEDLTPVDIRNMEFASEEHGEIFYRAYAKRHGFVVRKDEIDRDIKGNVIMRQFVCKKEGSRNKKHLMRVDRKKEHRPLTRLDCQAKIRIRLDYKTDKWKVVSFVETHNHELTPSTFVHLLPSNRGLNNVDKAQVGRLHAYGVRTCHIMGYMLDQKGGYGSLGFCRKDLYNYIERQKLEKIKDGDAHSALCYIQAKANNDPTFRASFLASEDAAVVTDGDSSMREASKQVAMYSNFTEDQFELFWKRMVAKHGLVGNKWVSKIYENRSLWATAYFRDKFFGRIRTTSQCEAINSLVKAYVNKKDTIVEFINRFEKVLREYRNNEMIADFKNLFTEPVLTTSLRKIESEASKIFTLEIFREVKSEIEVAGALNVNERLDQGDKLIFKMSHYCNRGSEFQVEYDVMNSKFVCECRLFESRGIPCSHIICVIKNENMQTIPSSLIVRRWTKKCKSDLISSYQSEDVDNDVMKEAHLGAVGGAFQRLGLQTSSEKIVKDPAVVKTKGAPPKRKDQQKMDDENEDEGNISLDEVNVDGMEPSDQTQRLNNNEVNVKISGRHKEKEKDCTQDVEVKVSGTHEGKEKGCTQQVEVKVSGSHDGKARECTQNVSLNHNVGNKGKEKEKICPIAPSFMRPFHNYIFCPGMPSQMMHMPHPQYGYVPMYPTGYPMVYPNMVMQNPQWFYRLITHTGLELARLFRL 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi156g00042 749 SMART 26again6 462 489 IPR006564 GO:0008270
Sebi156g00042 749 MobiDBLite consensus disorder prediction 554 573 - -
Sebi156g00042 749 MobiDBLite consensus disorder prediction 26 53 - -
Sebi156g00042 749 PANTHER OS01G0519700 PROTEIN 64 260 - -
Sebi156g00042 749 Pfam FAR1 DNA-binding domain 78 167 IPR004330 -
Sebi156g00042 749 ProSiteProfiles Zinc finger SWIM-type profile. 451 487 IPR007527 GO:0008270
Sebi156g00042 749 MobiDBLite consensus disorder prediction 554 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi156g00042 Sebi-Chr156 741827 745411 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi156g00042 FAR1 2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi156g00042 - - vvo:131613837 422.935