Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi156g00029 ATGGTTTTAGGTGCGATTTTCTTGTTGTACTTTGTCTTTGAGTTGTTTTACCAATTGTTTATTTGGTTGGTGCCGTCTTGCGACGGTTTCAAGGAAGAAGAGCGGAGGAGAATAGGGGCACAAATGGAAGAAGAGCAGAGGATAATAAGGGTACAAAGGGAAGAAGAGCGGAGGATAGCAAGGGCACAAAGGGAACGCATGGAAGAAGAGCAGAGGATAGCAAGGGCACAAATGGAAGAAGAGCGGAGGATAGCAAGGGCACAAATGGAAGAAGAGCAGAGGATAGCAGGGGCACAACTCACACAACAGTCGTATAGTAGTGCAAGGGCTTCTCAGACTCAGACTCAGAGGGAACCAAATAGATCGAATATTCCTAGACAAAGAGAAACTACAGATCATAGATCCACACCAAACACATATCCTATAAATATGGATCTGCCACCGGTTAAAACCTTCACACTTGATTGTGCCATTTGCATGGAACAATTCCAGATTGGGGATGTCATTCAACCTTTAGGAGTGTGTGCCCATGAGTTCCACCGCTCTTGCATTCGCGCTTGGTTGGATACCACAAAAACTACTTGTCCTCTTTGTCGCGAGCATGTATCCATCTCTCCATCCATGTAA 627 0.453 MVLGAIFLLYFVFELFYQLFIWLVPSCDGFKEEERRRIGAQMEEEQRIIRVQREEERRIARAQRERMEEEQRIARAQMEEERRIARAQMEEEQRIAGAQLTQQSYSSARASQTQTQREPNRSNIPRQRETTDHRSTPNTYPINMDLPPVKTFTLDCAICMEQFQIGDVIQPLGVCAHEFHRSCIRAWLDTTKTTCPLCREHVSISPSM 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi156g00029 208 SMART ring_2 156 198 IPR001841 -
Sebi156g00029 208 MobiDBLite consensus disorder prediction 95 121 - -
Sebi156g00029 208 Coils Coil 50 95 - -
Sebi156g00029 208 SMART FANCL_C_2 152 207 - -
Sebi156g00029 208 SUPERFAMILY RING/U-box 155 205 - -
Sebi156g00029 208 CDD RING-H2 156 199 - -
Sebi156g00029 208 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 63 199 - -
Sebi156g00029 208 Pfam Ring finger domain 155 199 IPR001841 -
Sebi156g00029 208 MobiDBLite consensus disorder prediction 90 142 - -
Sebi156g00029 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 203 IPR013083 -
Sebi156g00029 208 ProSiteProfiles Zinc finger RING-type profile. 156 199 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi156g00029 Sebi-Chr156 560905 561531 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi156g00029 156 199 C3H Transcription Factor Family AT1G33480 50.000 3.80e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi156g00029 - K16281 aprc:113865236 93.2041