Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi155g00120 ATGGGATTTCCAGTGGGGTATACAGAGCTTATGTTGCCAAAGGTGTTTGTGCAGCTGCTTTCCGTATTGGGTTTCATCAGGAAATTGGTGACCATCCTGTTGTGCTATCTGGGTCTGGAACCCGACGACATTGCCTGGCCGGAGAGGATGCCGGAATTCGAATCGGTGTCAGCTCTTCTGATGGGGGAAATCCTGCCGGTGGTGAAGTTCTCGGAGGTGGAGATGGTGGACCCTCAGGAGAGGTGCGCCGTGTGCCTGTACGACTTCGAGGCAGAGGACGAGATCAGAAGGCTCACAAACTGCCGCCACATATTCCACAGGGGATGTCTGGACCGTTGGATGGGATATGATCGGAGAACGTGCCCGTTGTGCCGGACACCCTTCATACCCCATCATATGCAAGATACTTTCAATGAAATTGACACACTCTGGGAAGCTTCTGGAATCCCTGATTTTTATGATGATCATCCTTCTACCATCACGCCTTTCTAG 492 0.5183 MGFPVGYTELMLPKVFVQLLSVLGFIRKLVTILLCYLGLEPDDIAWPERMPEFESVSALLMGEILPVVKFSEVEMVDPQERCAVCLYDFEAEDEIRRLTNCRHIFHRGCLDRWMGYDRRTCPLCRTPFIPHHMQDTFNEIDTLWEASGIPDFYDDHPSTITPF 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi155g00120 163 SMART ring_2 82 124 IPR001841 -
Sebi155g00120 163 SUPERFAMILY RING/U-box 81 131 - -
Sebi155g00120 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 130 IPR013083 -
Sebi155g00120 163 Pfam Ring finger domain 81 125 IPR001841 -
Sebi155g00120 163 ProSiteProfiles Zinc finger RING-type profile. 82 125 IPR001841 -
Sebi155g00120 163 PANTHER RING ZINC FINGER PROTEIN-RELATED 23 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi155g00120 Sebi-Chr155 1213912 1214403 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi155g00120 1 148 C3H Transcription Factor Family AT1G63840 57.325 1.04e-56 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi155g00120 K16281 - gmx:102665617 257.299