Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi155g00112 ATGGGGAAGGGTAAACCTAGGGCGGTGGAGAAAGGTGTGGTAGGGCCAAGTCTGAGTGCTGCGTCTTGTGGGTCCTCGACTATACCAGCGGGTCCTGTGTATTACCCAACTGAGGATGAATTCAAGGATCCTTTGGAATATATTTACAAGATTAGACCTGAGGCTGAGCCTTATGGAATTTGTAGGATTGTACCTCCAAAGAGTTGGAAACCCCCTTTTGCCTTGGATCTGGACTCTTTCACTTTCCCTACCAAAACTCAGGCTATTCACAAGCTACAGGCACGTCCTGCTGCCTCTGACCCCAAGACTTTTGACTTGGAGTACTCTAGGTTTTTACAGGATCATTGTGGCAAGAAGTCCAAGAAAAAGGTTGTGTTCGAGGGGGAGGAGTTGGACTTGTGTAAGCTATTCAATGCCGTCAAACGGTTTGGTGGATATGATAAGGTTGTCGATGAAAAGAAATGGGGGGATGTTGCTAGGTTTGTGAGGTCCACCAGGAAAATTTCGGACTGTGCTAAGCATGTATTATGTCAGTTGTACAGAGAGCATTTGTATGATTATGAGAATTTCTGTAACCGGATGAATCGATGTACAACTCGGAGTTGTAAAAAGGGCGTGCAAGAGGACCACGGGAGTGATCACGGGGTACAAACTTCAGCATCCACGAGGCATCATGGGAGTGTAGATAGTTTGAAAGTTAAGGATTGTAAAGTGCAGGAAGAAGAACATGATCAGATTTGTGAGCAATGCAAAAGTGGTTTGCATGGGGAGGTAATGCTTTTGTGCGATAGGTGTGATAAAGGATGGCATATTTATTGTCTTTCTCCACCATTGAAGCAAATTCCTCCAGGAAACTGGTATTGTCTCAACTGCTTGAATTCTGATAGAGACAGCTTTGGTTTTGTGCCTGGGAAGCATTATTCATTGGAAGCTTTTAGACGCATTGCAGACCGGTCAAGGAAGAGATGGTTTGGACATGGACCTGTTTCGAGGGTGCAAATAGAGAAAAAATTTTGGGAGATTGTAGAGGGATCGGTTGGTGAGGTTGAGGTTATGTACGGAAATGACTTGGATACATCTGTCTATGGGAGTGGTTTCCCGCGTGTAACTGATCAGAAACCACAATCTATCGATGATAACTTATGGCAAGAATACTCTACTAACCCATGGAATCTGAATAACTTGCCTAAGTTGAAAGGCTCAATGCTTCGAGCTGTTCATCATAATATCACTGGTGTTATGGTACCCTGGCTATATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTACTCGATGAATTATCTACACTGGGGAGAGCCAAAGTGTTGGTACAGTGTTCCTGGTAGTCAAGCCAGCGCTTTTGAGAAGGTGATGAGAAGCAGTCTTCCTGACCTTTTTGATGCACAACCTGATCTGCTTTTTCAGCTTGTCACTATGTTAAACCCATCTGTCTTGCAAGAAAATGGAGTTCCTGTCTACAGCATACTTCAGGAGCCTGGAAATTTTGTTATTACCTTCCCCAGATCTTATCATGGTGGTTTCAATCTTGGTTTAAATTGTGCAGAGGCAGTCAATTTTGCTCCAGCTGACTGGCTACCGTATGGTGCATTTGGAGCTGATCTCTATCAGCGGTATCACAAAACTGCTGTCTTGTCTCATGAGGAGCTTCTTTTTGTAGTGGCCCAGTATGGTGATGTTGATAGTAGAGCGTCTTCTTATTTGAAAAAGGAATTATTGAGAATATCAGATAAAGAAAAATCTTGGAGAGAGAAACTTTGGAAAAATGGTATCATTAAATCTTCTCGCTTAGCTCCTCGAAAATGTCCCCAATATGTGGGTACTGAAGAGGATCCAGCATGCATTATTTGCCAGCAATATCTCTATCTCTCTGCTGTTGTGTGCAGTTGCAGGCCATCATCTTTTGTGTGTTTGGAGCACTGGGAACGCCTTTGTGAGTGCAAAACTGTAAAACTCCGTCTTCTCTATCGTCATTCACTTGCAGAATTGTATGACTTGTCATTTTCTATGGACAAATATACTGCTGAGGACAAAGCTGAGTGTAGAAGTGTAAGAAGGCAGTCTTCATGTCTTGGTGCTTTGACAAAAAAGGTGAAAGGTGGCCCCATTACTTTTGCTCAACTTGCTACAGAATGGCTTCTGCAGTCTAGTACTATACTTCAAAACGTTTTTTTGACTGATGCATTTGTTACTGCACTAAAGAAAGCTGAACAATTTCTTTGGGCTGGTTCTGAGATGGATTCTGTTAGGGATATGGTGAAGAATTTGATTGAAGCTAAGAAATGGGCAGAAGGGATAAGAGATTGTGTGACAAAAATTGAGTTATGGAAGTGTCATCAGGACTCGAGTTTAAAGAAAATTCATTTAGAATTTGTTGACGAGTTACTGAGATTTAACCCTGTACCATGCAATGAGCCTCATTATCATAAATTGAAGGAATATGCAGAAGAAGCAAGGTTGTTAAGTCAGGAGATTGGTGCTGCTTTGTCAATCTGTTCTGAAATGTCTGAGTTGGAACTTTTATACTCCAGAGCTTGTGGCTTACCCATCTACTTGAAAGAGAGTAAGAAATTAGAAGGGAAAATTTCTTCAACCAAGGTTGATAACAGGACAGAAATATATTTGCTTGAACACGAGGGATACGGTTTCTTAGGAATGAAGTTAAAACTGATCTGGGAAGTTACTGCTGTTGGTTTAGTTGTTGCTCATAATGAAAATAATCTGGAAGATCCATGA 2775 0.4187 MGKGKPRAVEKGVVGPSLSAASCGSSTIPAGPVYYPTEDEFKDPLEYIYKIRPEAEPYGICRIVPPKSWKPPFALDLDSFTFPTKTQAIHKLQARPAASDPKTFDLEYSRFLQDHCGKKSKKKVVFEGEELDLCKLFNAVKRFGGYDKVVDEKKWGDVARFVRSTRKISDCAKHVLCQLYREHLYDYENFCNRMNRCTTRSCKKGVQEDHGSDHGVQTSASTRHHGSVDSLKVKDCKVQEEEHDQICEQCKSGLHGEVMLLCDRCDKGWHIYCLSPPLKQIPPGNWYCLNCLNSDRDSFGFVPGKHYSLEAFRRIADRSRKRWFGHGPVSRVQIEKKFWEIVEGSVGEVEVMYGNDLDTSVYGSGFPRVTDQKPQSIDDNLWQEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSQASAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRYHKTAVLSHEELLFVVAQYGDVDSRASSYLKKELLRISDKEKSWREKLWKNGIIKSSRLAPRKCPQYVGTEEDPACIICQQYLYLSAVVCSCRPSSFVCLEHWERLCECKTVKLRLLYRHSLAELYDLSFSMDKYTAEDKAECRSVRRQSSCLGALTKKVKGGPITFAQLATEWLLQSSTILQNVFLTDAFVTALKKAEQFLWAGSEMDSVRDMVKNLIEAKKWAEGIRDCVTKIELWKCHQDSSLKKIHLEFVDELLRFNPVPCNEPHYHKLKEYAEEARLLSQEIGAALSICSEMSELELLYSRACGLPIYLKESKKLEGKISSTKVDNRTEIYLLEHEGYGFLGMKLKLIWEVTAVGLVVAHNENNLEDP 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi155g00112 924 SUPERFAMILY FYVE/PHD zinc finger 234 292 IPR011011 -
Sebi155g00112 924 FunFam Predicted protein 352 555 - -
Sebi155g00112 924 Pfam JmjC domain, hydroxylase 417 533 IPR003347 -
Sebi155g00112 924 SUPERFAMILY Clavaminate synthase-like 335 564 - -
Sebi155g00112 924 CDD PHD_RSF1 247 291 - -
Sebi155g00112 924 FunFam Transcription factor jumonji (JmjC) domain-containing protein 18 121 - -
Sebi155g00112 924 SMART PHD_3 246 292 IPR001965 -
Sebi155g00112 924 Pfam jmjN domain 32 65 IPR003349 -
Sebi155g00112 924 Pfam PHD-finger 246 293 IPR019787 -
Sebi155g00112 924 Pfam C5HC2 zinc finger 627 678 IPR004198 -
Sebi155g00112 924 CDD ARID 100 188 - -
Sebi155g00112 924 SMART bright_3 99 193 IPR001606 GO:0003677
Sebi155g00112 924 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
Sebi155g00112 924 SMART ARID_2 95 188 - -
Sebi155g00112 924 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 293 IPR013083 -
Sebi155g00112 924 SUPERFAMILY ARID-like 81 195 IPR036431 GO:0003677
Sebi155g00112 924 Gene3D - 83 197 IPR036431 GO:0003677
Sebi155g00112 924 ProSiteProfiles JmjC domain profile. 384 550 IPR003347 -
Sebi155g00112 924 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Sebi155g00112 924 SMART cupin_9 384 550 IPR003347 -
Sebi155g00112 924 ProSitePatterns Zinc finger PHD-type signature. 247 291 IPR019786 -
Sebi155g00112 924 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Sebi155g00112 924 PANTHER LYSINE-SPECIFIC DEMETHYLASE 26 832 - -
Sebi155g00112 924 Gene3D Cupin 32 535 - -
Sebi155g00112 924 SMART JmjN_1 30 71 IPR003349 -
Sebi155g00112 924 ProSiteProfiles Zinc finger PHD-type profile. 244 294 IPR019787 -
Sebi155g00112 924 Pfam ARID/BRIGHT DNA binding domain 112 188 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi155g00112 Sebi-Chr155 1128562 1137915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi155g00112 31 95 JUMONJI Transcription Factor Family AT1G08620 57.971 2.70e-10 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Sebi155g00112 JmjC 4.4e-43 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi155g00112 K11446 - gmx:100789512 1634