Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi155g00107 ATGGATGGGAGAGAAGCTATGGCATTCTCTGGTGGCTCTGCTCCATATTACATACATAGAGGAGGGGTTGGTGGGTCTGTTCCTGGGACACAGAGTGGAGGGTTCCAAGCACCCTCTGGGTTTATAGCTTTGTCAAATGCACGGGATGGCTCTGCAGGTTCTGCATTTTCGGTAGAGCCTCCTCAGCGTGCCAGTTTTAGTCATGGTGTTAGCATAGGTTCTTCTCCTGGTCCTGGTGGGGTACCTTCTTCAGGGGAGCCTGTGAAAAAGAAAAGAGGGAGGCCCCGTAAGTATGGTCCTGATGGACCTGTTTCTTTGAGACTTTCTCCGATGTCTGCCCCTGCTAATTCCACCCCGGGCTCAAGCACTCCTTCCCAGAATCGGCGTAGAGGGCGCCCACCTGGAAGTGGAAGGAAGCAACAGCTAGCTGCTCTAGGTGAATGGATGAATAGTTCTGCAGGACTGGCTTTTTCACCTCATGTTGTCACCGTTGATGTTGGGGAGGACATTGTAGCAAAGTTATTGTCGATTTCACAACAGAGACCAAGGGCTCTCTGCATCATGTCGGGAACTGGGACAGTTTCTTCAGTCACTCTGTGCCAGCCAGCTTCGACTAATGTCAGCGTTACTTATGAGGGCCGATTTCAAATAGTGTACCTATCTGGTTCTTACTTGGTTGCTGAAGATGGCGGACCTCGCAATAGAACAGGTCGTGTGAGTGTTTCTCTTTCTAGTCCCGATGGCCATGTTATTGGTGGTGGTGTTGCTAGGCTTATTGCTGCAAGCTCTGTTCAGGTGGTAGTTTGCAGTTTTGTATATGGTGGATCTAAGCCAAAGACAACAACAAAGCAAGGGACCACTACAAAAAATGACGATTCAGAGCCTCAGAGTAGTGATAAGTTAGCATCTCCAGGCCCAGGCAATGCCCTGCCTAATCAAAACTACACCGCTTCTGCAACAGCCATTTGGCCTGGATCAAGGCCAGTAGATCTTCAAAGTGCACATCCTCACACTGGTATTGACTTGACGCGTGGGTGA 1038 0.4981 MDGREAMAFSGGSAPYYIHRGGVGGSVPGTQSGGFQAPSGFIALSNARDGSAGSAFSVEPPQRASFSHGVSIGSSPGPGGVPSSGEPVKKKRGRPRKYGPDGPVSLRLSPMSAPANSTPGSSTPSQNRRRGRPPGSGRKQQLAALGEWMNSSAGLAFSPHVVTVDVGEDIVAKLLSISQQRPRALCIMSGTGTVSSVTLCQPASTNVSVTYEGRFQIVYLSGSYLVAEDGGPRNRTGRVSVSLSSPDGHVIGGGVARLIAASSVQVVVCSFVYGGSKPKTTTKQGTTTKNDDSEPQSSDKLASPGPGNALPNQNYTASATAIWPGSRPVDLQSAHPHTGIDLTRG 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi155g00107 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 61 304 IPR039605 GO:0003680
Sebi155g00107 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 159 272 IPR005175 -
Sebi155g00107 345 ProSiteProfiles PPC domain profile profile. 151 294 IPR005175 -
Sebi155g00107 345 MobiDBLite consensus disorder prediction 19 141 - -
Sebi155g00107 345 Gene3D - 159 288 - -
Sebi155g00107 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 156 273 - -
Sebi155g00107 345 MobiDBLite consensus disorder prediction 326 345 - -
Sebi155g00107 345 CDD DUF296 159 271 IPR005175 -
Sebi155g00107 345 MobiDBLite consensus disorder prediction 110 130 - -
Sebi155g00107 345 MobiDBLite consensus disorder prediction 279 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi155g00107 Sebi-Chr155 1089381 1093412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi155g00107 1 345 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 49.606 9.03e-97 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi155g00107 - - gmx:100790569 461.455