Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi155g00103 ATGGCGAAGTTGTTAGCCTTAGCTTGTCTTCGAAATAAGGGATGGCATGAACTGTCGCCGCGACCTCACTACCCGTCCATGCCACGGTACCCCAAGGGCGGTGCCACCGTGGAGGAGGGTTCGGAGGAGGAGGAAATTCGCGAGGCCATTGAAGATGCTGGATTTGAGGCCACGTTACTCACGGATGCGGTGAGTGAAAAATCTGTTCAAGTGTGCCGCTTACAAATCAGAGGAATGACTTGTACATCGTGTTCCTCCACCGTTGAATCTGCTCTGGTAGCCATCCACGGTGTTGTGAAAGCTAGAGTAGCGTTGGCAACCGAAGAAGCTGAAGTTCACTACAGTCCAAATGTTGTTAGCTATAACCAAATTTTGGAAGCTGTAGAAGATACTGGATTCGAAGCTGCACTTATCAGTTCGAGTGAAGATTTGAGCAAGATAGACCTCCTGGTGGAAGGTGATCTCTCTGATCATTCAATGAAACTGATTGAAGATTCTCTTCGGGGACTCCCAGGGGTTCTAGATGTAGACATACGCGTTGAATTGAAGAAAGTTTCACTTTCTTATAAACCAGACATGACAGGGCCCAGGAACTTGATCAATGTGATTGAGGAAACTGGGAATTTCAAGGCAAAATTATTTCCTGAAGAAGGAGGAAGAAGGGATGCTCATAGAAGGGAGGAAATTAAGCAATATTATAGATCTTTCTTGTGGAGTTTGGTGTTTACTGTTCCTGTTTTTCTAACCTCCATGGTGCTTATGTATGTCCCTGGAGTAAAGGATGTATTGGATGCCAAAGTCGTCAATATGCTTACCGTTGGGGAAATTGCAAGATGGGTACTTGCCACTCCAGTGCAATTCATTTTGGGTTGGCGATTTTACTCTGGTTCTTACAAAGCATTACGCCATGGCTCTGCTAATATGGATGTTCTGATTGCCTTGGGAACAAATGCTGCGTACTTTTATTCAGTATACTCTGTCCTGAGAGCTGCTACTTCTCCGCATTTTGAGGGTACTGATTTCTTTGAGACTAGTGCTATGCTCATTTCGTTCATTCTCCTTGGCAAGTATCTTGAGATTTTAGCTAAGGGGAAGACATCCAATGCAATTGCCAAGCTTATGAACTTGACCCCAGACACTGCTATATTGTTAAATCTGGATAGTGAAGGGAATGTTATTGGGGAGCAAGAAATTGATAGCCGATTGGTTCAAAAGAATGATGTGATTAAAGTTATTCCTGGTGCAAAAGTGGCTTCAGATGGGTTGGTTATATGGGGCCAGAGTCACGTGAATGAGAGCATGATCACAGGTGAGGCACGTCCTGTGGCGAAGAGGAAAGGCGACACTGTTATTGGAGGAACCGTGAATGAGAATGGAGTGCTGCATGTTAAGGCAACGCGGGTTGGATCAGAAAGTGCTCTTTCCCAGATTGTTCGACTTGTTGAGTCAGCACAGATGGCCAAGGCGCCTGTGCAAAAGTTTGCTGATCGCATTTCGAAATACTTTGTGCCTTTGGTGATCTTAATATCATTTACTACTTGGCTTGCCTGGTTTTTAGCAGGAAGATTTCATGCTTACCCAAAGTCTTGGATACCATCTTCCATGGACAGCTTTGAGCTTGCTTTGCAGTTTGGAATATCTGTCATGGTCATAGCCTGCCCTTGTGCTTTGGGTTTAGCAACACCAACTGCTGTTATGGTTGGCACTGGAGTTGGTGCATCTCAGGGTGTACTGATCAAAGGAGGGCAAGCATTAGAAAGTGCACATAAGGTGAACTGCATTGTTTTTGACAAGACTGGAACTCTCACCGTTGGGAAACCTGTGATAGTAAATACAAAACTATTGACAAAAATGGTACTAAGGGAATTCTATGAACTTGTGGCTGCTACTGAGGTGAATAGTGAGCATCCACTGGCTAAGGCCATTGTCGAGTATGCCAAAAAATTCAGAGATGAAGAGAACCCTTCTTGGCCAGAAGCACAAGATTTTGTTTCCATTACTGGACACGGAGTAAAGGCCACTGTTCGTAACAAGGAAATAATTGTGGGTAACAAGAGCTTGTTGGCTGACCATAGCATTGAGATTCCCAGTATTGCTGAAGATATGCTTGCCGAAGCCGAAAAGATGGCTCAAACGGGAATTTTGGTATCTATAAATGGGGAAGTAGCTGCTGTTTTAGCAGTATCTGATCCATTGAAACCAGGTGCGCAAGAAGTCATTTCCATTCTCAAGTCTATGAAAATTAGAAGCATCATGGTGACCGGGGACAACCTTGGAACTGCCAATTCTATTGCGAGGGAAGTTGGAATTGAAGATGTTATGGCTGAGGCCAAACCTGAGCAGAAAGCAGAGAAAGTGAAAGAGTTGCAGGCTTTTGGGTACACGGTGAGTATGGTGGGGGATGGTATCAATGATTCACCTGCACTTGTGGCAGCCGATGTGGGAATGGCAATAGGTGCTGGTACAGACATTGCTATTGAAGCAGCTGATATTGTCCTCATGAAGAGCAACCTGGAGGATGTCATAACTGCCATTGACCTTTCGAGAAAAACATTTTCCCGTATACGCTTGAATTACTTTTGGGCTTTGGGTTACAATATGCTTGGCATCCCAATCGCTGCTGGAGCTCTTTTCCCTTCAACAGGGTTCCGATTGCCACCCTGGATTGCTGGGGCTGCTATGGCTGCCTCTTCTGTCAGCGTTGTTTGCTGTTCTCTGTTGTTGAAATATTACAGGAGACCCGGGAAGCTTGACAATCTTGACATACGGGGTATTAGAGTCGAGTGA 2787 0.4499 MAKLLALACLRNKGWHELSPRPHYPSMPRYPKGGATVEEGSEEEEIREAIEDAGFEATLLTDAVSEKSVQVCRLQIRGMTCTSCSSTVESALVAIHGVVKARVALATEEAEVHYSPNVVSYNQILEAVEDTGFEAALISSSEDLSKIDLLVEGDLSDHSMKLIEDSLRGLPGVLDVDIRVELKKVSLSYKPDMTGPRNLINVIEETGNFKAKLFPEEGGRRDAHRREEIKQYYRSFLWSLVFTVPVFLTSMVLMYVPGVKDVLDAKVVNMLTVGEIARWVLATPVQFILGWRFYSGSYKALRHGSANMDVLIALGTNAAYFYSVYSVLRAATSPHFEGTDFFETSAMLISFILLGKYLEILAKGKTSNAIAKLMNLTPDTAILLNLDSEGNVIGEQEIDSRLVQKNDVIKVIPGAKVASDGLVIWGQSHVNESMITGEARPVAKRKGDTVIGGTVNENGVLHVKATRVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVILISFTTWLAWFLAGRFHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVIVNTKLLTKMVLREFYELVAATEVNSEHPLAKAIVEYAKKFRDEENPSWPEAQDFVSITGHGVKATVRNKEIIVGNKSLLADHSIEIPSIAEDMLAEAEKMAQTGILVSINGEVAAVLAVSDPLKPGAQEVISILKSMKIRSIMVTGDNLGTANSIAREVGIEDVMAEAKPEQKAEKVKELQAFGYTVSMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYFWALGYNMLGIPIAAGALFPSTGFRLPPWIAGAAMAASSVSVVCCSLLLKYYRRPGKLDNLDIRGIRVE 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi155g00103 928 NCBIfam copper ion binding protein 74 135 IPR006122 GO:0005507
Sebi155g00103 928 ProSitePatterns Heavy-metal-associated domain. 76 105 IPR017969 GO:0046872
Sebi155g00103 928 SUPERFAMILY Calcium ATPase, transmembrane domain M 340 873 IPR023298 -
Sebi155g00103 928 Gene3D - 680 730 IPR023299 GO:0000166
Sebi155g00103 928 Gene3D - 602 679 IPR023299 GO:0000166
Sebi155g00103 928 Gene3D - 363 485 - -
Sebi155g00103 928 SUPERFAMILY HMA, heavy metal-associated domain 142 207 IPR036163 GO:0046872
Sebi155g00103 928 ProSiteProfiles Heavy-metal-associated domain profile. 145 211 IPR006121 GO:0046872
Sebi155g00103 928 SFLD p-type atpase 577 851 IPR044492 -
Sebi155g00103 928 SUPERFAMILY HMA, heavy metal-associated domain 67 140 IPR036163 GO:0046872
Sebi155g00103 928 PRINTS Copper-transporting ATPase 1 signature 236 257 - -
Sebi155g00103 928 PRINTS Copper-transporting ATPase 1 signature 271 291 - -
Sebi155g00103 928 PRINTS Copper-transporting ATPase 1 signature 97 120 - -
Sebi155g00103 928 PRINTS Copper-transporting ATPase 1 signature 71 96 - -
Sebi155g00103 928 PRINTS Copper-transporting ATPase 1 signature 126 146 - -
Sebi155g00103 928 PRINTS Copper-transporting ATPase 1 signature 291 316 - -
Sebi155g00103 928 ProSiteProfiles Heavy-metal-associated domain profile. 70 136 IPR006121 GO:0046872
Sebi155g00103 928 CDD HMA 74 136 IPR006121 GO:0046872
Sebi155g00103 928 Gene3D - 562 856 IPR023214 -
Sebi155g00103 928 Pfam Heavy-metal-associated domain 74 134 IPR006121 GO:0046872
Sebi155g00103 928 Gene3D - 145 216 - -
Sebi155g00103 928 CDD P-type_ATPase_Cu-like 234 909 - -
Sebi155g00103 928 Pfam haloacid dehalogenase-like hydrolase 591 813 - -
Sebi155g00103 928 SUPERFAMILY Calcium ATPase, transduction domain A 395 481 IPR008250 -
Sebi155g00103 928 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 42 924 - -
Sebi155g00103 928 FunFam Copper-transporting ATPase HMA5 69 140 - -
Sebi155g00103 928 FunFam Probable copper-transporting ATPase HMA5 708 856 - -
Sebi155g00103 928 NCBIfam HAD-IC family P-type ATPase 348 882 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi155g00103 928 Pfam E1-E2 ATPase 394 573 - -
Sebi155g00103 928 NCBIfam heavy metal translocating P-type ATPase 308 908 IPR027256 GO:0006812|GO:0016020|GO:0019829
Sebi155g00103 928 SUPERFAMILY HAD-like 594 905 IPR036412 -
Sebi155g00103 928 Gene3D - 70 142 - -
Sebi155g00103 928 PRINTS P-type cation-transporting ATPase superfamily signature 724 735 - -
Sebi155g00103 928 PRINTS P-type cation-transporting ATPase superfamily signature 595 609 - -
Sebi155g00103 928 PRINTS P-type cation-transporting ATPase superfamily signature 799 818 - -
Sebi155g00103 928 PRINTS P-type cation-transporting ATPase superfamily signature 431 445 - -
Sebi155g00103 928 PRINTS P-type cation-transporting ATPase superfamily signature 822 834 - -
Sebi155g00103 928 PRINTS P-type cation-transporting ATPase superfamily signature 746 756 - -
Sebi155g00103 928 SFLD C1.7: P-type atpase like 577 851 - -
Sebi155g00103 928 ProSitePatterns E1-E2 ATPases phosphorylation site. 597 603 IPR018303 -
Sebi155g00103 928 FunFam Copper-transporting ATPase 1, putative 363 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi155g00103 Sebi-Chr155 1050440 1054661 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi155g00103 44 928 Primary Pumps ATPases AT1G63440 78.676 0.0 1445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi155g00103 K17686 - gmx:100816893 1496.49