Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi155g00087 ATGGATTCTACAACCAACAGACCCAATGGTGCTTTGAGAAGCCGAGGAGGAGGGTTCAAGTGGTTTTCTGATGCAGAATTACAGGAGATCAAGAAAGGGCAGTGTTTTAGGTGTCATAAGAAACATGGCCCAGATCACGTGTGCCAGAACAAGCAATTTGCAGTGATGTTACTGGAGGAAGATTACTGGGAGATGGAAGGGGCATCAAAGGAAGACATTGAGCAATTGTCAAAATTCAAATTCCGAAGAGTTGAAAGTAATGAGAAACCTACTGGTAATGCACAAGGACCTGTTGGAGGAATAATGACTGAATGCCAGGCGGATTCACCTATTGAACATGTTCTTGCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCTTCTTATGACGATGGGGTTGAACTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGATAAATGGCTGTATATTAATGCTACATGCCCCCTCTGCAAGTATAACATCTTGAAAAGTAGCAACCTCGGTCAAGAGGAAGTGTAG 534 0.4401 MDSTTNRPNGALRSRGGGFKWFSDAELQEIKKGQCFRCHKKHGPDHVCQNKQFAVMLLEEDYWEMEGASKEDIEQLSKFKFRRVESNEKPTGNAQGPVGGIMTECQADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSNLGQEEV 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi155g00087 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 175 IPR013083 -
Sebi155g00087 177 SMART ring_2 122 162 IPR001841 -
Sebi155g00087 177 ProSiteProfiles Zinc finger RING-type profile. 122 163 IPR001841 -
Sebi155g00087 177 Pfam Ring finger domain 121 163 IPR001841 -
Sebi155g00087 177 SUPERFAMILY RING/U-box 112 169 - -
Sebi155g00087 177 FunFam E3 ubiquitin-protein ligase At1g12760 108 173 - -
Sebi155g00087 177 PANTHER TARGET OF ERK KINASE MPK-1 64 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi155g00087 Sebi-Chr155 897824 899612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi155g00087 66 168 C3H Transcription Factor Family AT1G68070 53.774 8.19e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi155g00087 - - gmx:100800429 228.794