Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi155g00082 ATGAGATCCGACGCTCTCGGCGTCCTCAATGACTTTCTAGCCGAGCAGCAGAGCCACCTCGTTGCTGACTCGAATGCCGGAGACTCCAAGATTGCTCTCGTTATTCGACATGGATTGGACTCGGAGATCACCGTTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGCAAGTTCCACGAGTACATTAACCCATCCACCTCAACAAAGCAGTTCTTTGATCAGTATCAGATGACTGTAGGAACTGATCTGTGGAGCTCTCATTATGAGAAAATGCAAGAGACCTTGAAGAAATTGAAAGACGTGAACAAGAATCTTCACAAGGAGATTAGGCAGGGGATGGAGTATTGCCAGATACACAGAAGCTTGAACCAATTGTGGAGGGAGAAGTGGAATTTTTGGCTGAGAGTTGAGTGTGGATGTGGCTTTGGAGAGGATTTCAGAGCTTCATCCCAGAGAATCAGACCCACTGTAATCATCTTCTCCATCTTTGGCTTTGATATCTTCACTTTCAAACTTCCAGGTACAGCCTCACGACACACACCATACCCAAGGTCCCTTGAGGAAGAAATGGACAAGGCCGACAAGGTTATCCGTGAGCGTAAGTATAAGGTGATAACCAATCAGATTTACATAGCTTTTGGTACGAAGCTTTCACATAACTTTTCTAGTAATGAAAATATACTTACTATTGGCACACAACATGCTCTTGACCCATTAACCTTGTTGAAAGCTCGGGTGAACAATTATGGCAGGGCAAGTGTTGTGATCAAGCATGATTGGAAACTAAGAACCCGTTTCTCTCTTGTTGGTGAGCTTGGATTATGCACAAGAGCTGTTTGA 852 0.4448 MRSDALGVLNDFLAEQQSHLVADSNAGDSKIALVIRHGLDSEITVLCDAKVSIIMFSSTGKFHEYINPSTSTKQFFDQYQMTVGTDLWSSHYEKMQETLKKLKDVNKNLHKEIRQGMEYCQIHRSLNQLWREKWNFWLRVECGCGFGEDFRASSQRIRPTVIIFSIFGFDIFTFKLPGTASRHTPYPRSLEEEMDKADKVIRERKYKVITNQIYIAFGTKLSHNFSSNENILTIGTQHALDPLTLLKARVNNYGRASVVIKHDWKLRTRFSLVGELGLCTRAV 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi155g00082 283 Coils Coil 92 115 - -
Sebi155g00082 283 SMART madsneu2 26 68 IPR002100 GO:0003677|GO:0046983
Sebi155g00082 283 SUPERFAMILY SRF-like 41 103 IPR036879 GO:0003677|GO:0046983
Sebi155g00082 283 ProSitePatterns Eukaryotic mitochondrial porin signature. 238 260 IPR001925 GO:0005741|GO:0008308|GO:0098656
Sebi155g00082 283 Pfam Eukaryotic porin 215 276 IPR027246 GO:0005741|GO:0055085
Sebi155g00082 283 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 41 65 IPR002100 GO:0003677|GO:0046983
Sebi155g00082 283 ProSiteProfiles MADS-box domain profile. 42 69 IPR002100 GO:0003677|GO:0046983
Sebi155g00082 283 Gene3D Porin 207 279 IPR023614 -
Sebi155g00082 283 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 216 276 IPR001925 GO:0005741|GO:0008308|GO:0098656
Sebi155g00082 283 Gene3D - 40 123 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi155g00082 Sebi-Chr155 838589 839529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi155g00082 42 131 MADS-box Gene Family AT3G54340 50.000 1.75e-25 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi155g00082 Porin_3 3.8e-12 CL0193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi155g00082 K09264 - gmx:547720 139.813