Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi155g00055 ATGAGAAGACACCGTCAAATTCATCTCTCTCATGCTCTGTTGTTCGCCATTCTCTGTTTACTTGTCACGGTCTCTGCAGCAACTGAGAAGGAGATTTTACTTCAATTCAAGGGTAACATCACGGATGATCCTCACAATAGCTTGAGTTCGTGGGTTTCAAGCGGAAACCCTTGTCAAGGTTACAATGGTGTTTCCTGTAACTCGGAAGGATTTGTAGAAAGAATCGTCCTTTGGAACACTAGCTTGGGTGGGGTGTTGGCCCCGGCACTTTCGGGGTTGAAGAGGTTGAGGATATTGACATTGTTCGGGAATCGCTTCACGGGTAGTATCCCAGATGGGTATGCTGATCTTCACTCGTTGTGGAAAATCAATTTGAGCTCCAATGCGTTATCTGGTTCAATCCCAGAGTTCATAGGTGATTTACCTAGCATTCGCTTTCTAGATTTATCAAAGAATGGCTTCACTGGGGAGATACCTTCGGCTTTGTTTAGGTACTGTTACAAAACCAAGTTTGTTTCTCTTTCTCATAACAATATTGTTGGTCCAATTCCTGCCTCCTTGGTGAATTGTTCTAACCTTGAAGGGTTCGATTTTTCCTTCAACAATCTTACTGGGGTTGTCCCTTCGCGAATTTGTGATATTCCAAGGTTATCATATGTATCGCTTAGAAGCAATGCTTTGTCAGGGACCGTGCAACAGCTCATTTCAGCTTGTCAAAGTCTGGTACATTTGGATTTTGGTAGTAATGGCTTCACCGATTTAGCCCCATTCAGCATCCTTGAAATGCAGAATCTTACCTATTTCAATATATCACATAATGGGTTTGAAGGACATATTCCTGAGATCACTGCCTGTAGTGAAAGATTAGAAATCTTTGATGCTTCAGGTAATCATTTGGATGGGGAGATTCCCTCCAGCATAACTAAATGCGGAAACCTAAAGCTCTTGGCTTTGGAGTTGAATAGGCTGAAAGGGACTATCCCAGTTGATATTCAGGAATTGAGAAGACTGGTAGTTATCAAATTGGGTAATAATTCGATAGGTGGAGTGATTCCCAAGGGTTTTGGCAACATTGAGCTGCTTGAATTGCTGGATTTGCACAATTTAAACCTCATTGGTGAAATTCCAGTTGATATAAGCAATTGCAAGTTTCTTCTTGAGCTGGATATTTCTGGTAATAACTTGGAGGGTGAGATTCCTGAGACATTTTACAACATGACAAAGCTGGAAGCTCTTGACCTGCATCATAACCAGCTTAAGGGAAGCATCCCACCAAGCCTAGGAAACCTATCAAGGATCCAATACCTAGATCTGTCACATAATGAAGTTTCTGGTTCAATTCCTCCTTCCCTTGGAAATTTAAAAAACTTGACACATTTTGATCTCTCATTCAACAATCTCTCTGGTGCCATTCCTAATATTGCAACCATTCAGAATTTTGGTGCATCTGCATTTTCCAATAATCCTTTTCTCTGTGGTGCCCCTTTGGACAATCCTTGCTCAGAAAACGGAACTAGCAGCTCACCTTCAGCTCCTGGGAAGACTAAAGTTCTCAGTGCCTCTGTAATTGTTGCAATTGTTGCTGCGGCTGTAATTCTGACTGGGGTTTGTTTGGTGACCATCATGAATGTTAGGGCTCGACGTAGAAAAAAAGATGATGATCAGATTATGATTGTTGAGAGTACATCTCTTGGATCATCAGGATCAGGTGTTATAATTGGAAAGCTGGTTCTCTTCAGCAAAAGTTTACCGTCAAAATATGAAGATTGGGAGGCAGGTACCAAAGCATTGCTTGACAAAGAATCTTTGATAGGTAGTGGATCCATTGGAACAGTCTACAGAACTGATTTTGAAGGTGGCATCTCAATTGCAGTGAAGAAGCTTGAGACTTTGGGAAGGATCAGAAATCAGGAGGAATTTGAACAAGAAATTGGGCGACTGGGCAACCTTCAACACCCTAATTTAGTTGCTTTTCAAGGTTACTACTGGTCCACTTCAATGCAGTTGATTCTATCAGAGTTTGTCCCAAATGGGAATCTCTATGATAATCTACATGGGTTTGGCTATCCTGGAACTAGCACTAGTAGAGAGAATGAATTAATTCAGGTTATGAGATTGGGGTTAATTTGTACTTCGGAGGATCCTTTAAGGAGACCAAGCATGGCTGAGGTTGTCCAGGTCCTTGAGTCCATTAGAAATGGATTGGAATCTCATTAA 2217 0.4154 MRRHRQIHLSHALLFAILCLLVTVSAATEKEILLQFKGNITDDPHNSLSSWVSSGNPCQGYNGVSCNSEGFVERIVLWNTSLGGVLAPALSGLKRLRILTLFGNRFTGSIPDGYADLHSLWKINLSSNALSGSIPEFIGDLPSIRFLDLSKNGFTGEIPSALFRYCYKTKFVSLSHNNIVGPIPASLVNCSNLEGFDFSFNNLTGVVPSRICDIPRLSYVSLRSNALSGTVQQLISACQSLVHLDFGSNGFTDLAPFSILEMQNLTYFNISHNGFEGHIPEITACSERLEIFDASGNHLDGEIPSSITKCGNLKLLALELNRLKGTIPVDIQELRRLVVIKLGNNSIGGVIPKGFGNIELLELLDLHNLNLIGEIPVDISNCKFLLELDISGNNLEGEIPETFYNMTKLEALDLHHNQLKGSIPPSLGNLSRIQYLDLSHNEVSGSIPPSLGNLKNLTHFDLSFNNLSGAIPNIATIQNFGASAFSNNPFLCGAPLDNPCSENGTSSSPSAPGKTKVLSASVIVAIVAAAVILTGVCLVTIMNVRARRRKKDDDQIMIVESTSLGSSGSGVIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGSGSIGTVYRTDFEGGISIAVKKLETLGRIRNQEEFEQEIGRLGNLQHPNLVAFQGYYWSTSMQLILSEFVPNGNLYDNLHGFGYPGTSTSRENELIQVMRLGLICTSEDPLRRPSMAEVVQVLESIRNGLESH 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi155g00055 738 Pfam Protein tyrosine and serine/threonine kinase 601 685 IPR001245 GO:0004672|GO:0006468
Sebi155g00055 738 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 170 685 - -
Sebi155g00055 738 Gene3D Ribonuclease Inhibitor 167 508 IPR032675 -
Sebi155g00055 738 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 26 164 - -
Sebi155g00055 738 SMART LRR_typ_2 406 430 IPR003591 -
Sebi155g00055 738 SMART LRR_typ_2 141 165 IPR003591 -
Sebi155g00055 738 SMART LRR_typ_2 334 357 IPR003591 -
Sebi155g00055 738 SMART LRR_typ_2 454 478 IPR003591 -
Sebi155g00055 738 SUPERFAMILY L domain-like 70 161 - -
Sebi155g00055 738 ProSiteProfiles Leucine-rich repeat profile. 408 431 IPR001611 GO:0005515
Sebi155g00055 738 ProSiteProfiles Protein kinase domain profile. 598 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi155g00055 738 Gene3D Transferase(Phosphotransferase) domain 1 585 694 - -
Sebi155g00055 738 Gene3D Ribonuclease Inhibitor 25 166 IPR032675 -
Sebi155g00055 738 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g12460 165 503 - -
Sebi155g00055 738 Pfam Leucine rich repeat 387 442 IPR001611 GO:0005515
Sebi155g00055 738 Pfam Leucine rich repeat 95 153 IPR001611 GO:0005515
Sebi155g00055 738 SUPERFAMILY L domain-like 164 492 - -
Sebi155g00055 738 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Sebi155g00055 738 FunFam Putative LRR receptor-like serine/threonine-protein kinase 575 674 - -
Sebi155g00055 738 SUPERFAMILY Protein kinase-like (PK-like) 598 689 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi155g00055 Sebi-Chr155 559646 562390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi155g00055 696 737 Receptor kinase-like Gene Family AT1G62950 80.952 3.74e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Sebi155g00055 PK_Tyr_Ser-Thr 1.8e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi155g00055 - - gmx:100805681 1155.97