Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi155g00028 ATGGCAGACGAAGCAAAAGCTAAAGGCAACGCAGCATTCTCTTCCGGCGACTTCGACGCCGCCATCCGTCACTTCTCGGATGCCATCGCTCTCTCCCCTGACAACCACGTCCTCTATTCCAACCGATCCGCCGCTTACGCCTCCCTCCAAAAGTACACCGAGGCCTTAACTGACGCCAAGAAGACCGTCGAACTCAAGCCTGATTGGTCCAAGGGCTACAGCCGTCTCGGCGCCGCTCATCTTGGCCTCGCCCAATACGACGACGCTGTTTCGGCTTACAAAAAGGGCCTTGAAATCGACCCCAATAATGAACCCCTCAAATCCGGTTTAGCTGATGCCCAGGCTCGTGCTGCGTCAGCTTCCAGGCCACGCTCTGCAAATCCCTTCGGTGACGCTTTCTCAGGCCCAGAGATGTGGGCCAGGCTCACCGCTGACCCTACCACTAGGGCTTACCTTCAACAACCCGATTTCGTGCAGATGATGCAGGATATTCAGAAAAATCCCAGCAATCTCAATTTGTATTTGAAAGATCAAAGAGTCATGCAAGCCATCGGGGTTTTGCTCAACGAGGACAGGGACGCAAAGCAGAGGAAGGCTGAGGCTCAGAAGGAAAAGGAGGCGGGAAATGCAGCATACAAGAAGAAGGATTTTGACACCGCAATTCAACATTACTCAAAGGCTTTGGAGCTTGATGATGAAGACATATCGTATCTCACGAACCGCGCTGCCGTTTACTTGGAAATGGGAAAGTATGAGGAATGCATAAAAGATTGTGATAAGGCTGTTGAAAGAGGAAGAGAACTAAGATCAGACTTCAAGATGATAGCAAGAGCTTTGACAAGGAAAGGGAATGCTTTGGTCAAAATGGCAAAATGCTCGAAAGATTATGAACCTGCTATTGAGACTTACCAAAAAGCACTTACAGAGCACCGCAACCCAGACACCTTGAAGAAACTTAATGAAGCTGAAAAGGCTAAGAAAGAGCTAGAGCAACAAGAATACTTTGATCCAAAGTTGGCTGATGAAGAGAGAGAAAAAGGAAATGAATTCTTTAAGGAGCAGAAATATCCTGAGGCCGTGAAGCACTACACAGAGTCTATAAGAAGAAACCCAAACGATCCTAGGGCTTATAGTAACAGAGCAGCATGTTACACTAAACTGGGGGCAATGCCTGAGGGTTTAAAGGATGCAGAGAAGTGCATTGAGCTTGATCCAACATTTGTAAAGGGTTATACCAGGAAAGGTGCCGTTCAGTTTTTCACGAAAGAATATGACAAGGCTTTGGAGACATATAAGGAGGGGTTGAAACATGACCCTAACAACCAGGAGTTGCTTGATGGCATTGGAAGATGTGTGCAACAAATTAATAAGGCCAGTCGTGGAGATTTAAGCCCTGAAGAATTGAAGGAGAGACAGGCCAAGGCAATGCAGGACCCAGAGATACAGAACATTCTGCAAGACCCTGTTATGAGACAGGTATTGATTGATTTCCAGGAAAATCCTAAGGCTGCACAGGAACATATGAAGAATCCAATGGTCATGAACAAGATCCAAAAGCTGATCAGTGCTGGAATTGTCCAGATGAGGTAA 1590 0.4698 MADEAKAKGNAAFSSGDFDAAIRHFSDAIALSPDNHVLYSNRSAAYASLQKYTEALTDAKKTVELKPDWSKGYSRLGAAHLGLAQYDDAVSAYKKGLEIDPNNEPLKSGLADAQARAASASRPRSANPFGDAFSGPEMWARLTADPTTRAYLQQPDFVQMMQDIQKNPSNLNLYLKDQRVMQAIGVLLNEDRDAKQRKAEAQKEKEAGNAAYKKKDFDTAIQHYSKALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGNALVKMAKCSKDYEPAIETYQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPKLADEEREKGNEFFKEQKYPEAVKHYTESIRRNPNDPRAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFVKGYTRKGAVQFFTKEYDKALETYKEGLKHDPNNQELLDGIGRCVQQINKASRGDLSPEELKERQAKAMQDPEIQNILQDPVMRQVLIDFQENPKAAQEHMKNPMVMNKIQKLISAGIVQMR 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi155g00028 529 SMART tpr_5 2 35 IPR019734 GO:0005515
Sebi155g00028 529 SMART tpr_5 276 313 IPR019734 GO:0005515
Sebi155g00028 529 SMART tpr_5 201 234 IPR019734 GO:0005515
Sebi155g00028 529 SMART tpr_5 374 407 IPR019734 GO:0005515
Sebi155g00028 529 SMART tpr_5 408 441 IPR019734 GO:0005515
Sebi155g00028 529 SMART tpr_5 36 69 IPR019734 GO:0005515
Sebi155g00028 529 SMART tpr_5 70 103 IPR019734 GO:0005515
Sebi155g00028 529 SMART tpr_5 235 268 IPR019734 GO:0005515
Sebi155g00028 529 SMART tpr_5 340 373 IPR019734 GO:0005515
Sebi155g00028 529 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Sebi155g00028 529 SUPERFAMILY TPR-like 339 452 IPR011990 GO:0005515
Sebi155g00028 529 Gene3D - 460 529 - -
Sebi155g00028 529 Pfam Tetratricopeptide repeat 7 64 - -
Sebi155g00028 529 FunFam Putative stress-induced-phosphoprotein 1 125 193 - -
Sebi155g00028 529 SMART CBM 478 517 IPR006636 -
Sebi155g00028 529 SMART CBM 135 174 IPR006636 -
Sebi155g00028 529 Coils Coil 312 332 - -
Sebi155g00028 529 ProSiteProfiles TPR repeat profile. 201 234 IPR019734 GO:0005515
Sebi155g00028 529 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Sebi155g00028 529 Pfam STI1 domain 470 521 IPR041243 -
Sebi155g00028 529 Pfam STI1 domain 136 189 IPR041243 -
Sebi155g00028 529 FunFam Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) 461 529 - -
Sebi155g00028 529 ProSiteProfiles TPR repeat profile. 340 373 IPR019734 GO:0005515
Sebi155g00028 529 Pfam Tetratricopeptide repeat 409 441 IPR001440 GO:0005515
Sebi155g00028 529 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Sebi155g00028 529 FunFam Stress-induced phosphoprotein 1 198 332 - -
Sebi155g00028 529 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Sebi155g00028 529 ProSiteProfiles TPR repeat profile. 374 407 IPR019734 GO:0005515
Sebi155g00028 529 Gene3D Tetratricopeptide repeat domain 339 459 IPR011990 GO:0005515
Sebi155g00028 529 ProSiteProfiles TPR repeat profile. 408 441 IPR019734 GO:0005515
Sebi155g00028 529 FunFam Stress-induced phosphoprotein 1 1 116 - -
Sebi155g00028 529 FunFam hsp70-Hsp90 organizing protein 3-like 339 453 - -
Sebi155g00028 529 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Sebi155g00028 529 PANTHER TPR REPEAT CONTAINING PROTEIN 2 501 - -
Sebi155g00028 529 Pfam TPR repeat 347 388 - -
Sebi155g00028 529 Pfam TPR repeat 208 249 - -
Sebi155g00028 529 Gene3D - 126 191 - -
Sebi155g00028 529 Gene3D Tetratricopeptide repeat domain 198 334 IPR011990 GO:0005515
Sebi155g00028 529 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Sebi155g00028 529 SUPERFAMILY TPR-like 200 328 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi155g00028 Sebi-Chr155 280758 285137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi155g00028 339 451 U-box Gene Family AT3G07370 28.319 3.69e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi155g00028 K09553 - qsa:O6P43_034125 892.108