Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi154g00100 ATGGCTTCTGAGCAACGTAGAAAAGCAGCTATGCAGCGCAAGTTGCAACAACTTCGATCCGTCACAAATTCCAGTGCTGTGAACAAAGCCTCAATTATTGTGGATGCCACCAGATACATAGAGGAGTTGAAGCAAAAAGTGGAGGGATTGGACTCTCAGCTTGGAACCGCTGAATCTTCATCAACCTCTCAAGATAAACTGCCTATGGTCACCGTAGAAACCCTAGAAAAGGGTTTCCTTATTAATGTGTTTTCAGAAAGGAATTGCCCTGGTATGCTTGTGGCAATACTTGACGCCTTTGAAGAACTGGGACTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCATCTAGAAGCTGTGGGAGGAGAAAGTCAAGAGAATGAGAGCATCGACGCGCAAGTGGTGAAGCAAGCAGTGCTGCAAGCAATCAACAACATGGATTAA 453 0.4503 MASEQRRKAAMQRKLQQLRSVTNSSAVNKASIIVDATRYIEELKQKVEGLDSQLGTAESSSTSQDKLPMVTVETLEKGFLINVFSERNCPGMLVAILDAFEELGLDVLDARVSCEDTFHLEAVGGESQENESIDAQVVKQAVLQAINNMD 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi154g00100 150 CDD ACT_UUR-ACR-like 90 146 - -
Sebi154g00100 150 Gene3D - 1 68 IPR036638 GO:0046983
Sebi154g00100 150 Coils Coil 1 21 - -
Sebi154g00100 150 ProSiteProfiles ACT domain profile. 81 150 IPR002912 -
Sebi154g00100 150 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 146 - -
Sebi154g00100 150 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 57 IPR036638 GO:0046983
Sebi154g00100 150 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi154g00100 Sebi-Chr154 1494793 1496194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi154g00100 1 63 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 40.625 3.95e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi154g00100 - - ccaj:109816195 259.61