Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi154g00094 ATGCAACCAAGGATAAGTGTTGGAGATGGTTTCCGTGTTAGTGCTGCATCAAGTAGTAATTCAAGCGGAGGATCTGAACCAGATGACATAGAGTCACTAGGTGATGTTTACATATGGGGAGAGGTTTTGGCAGATGAGGTTTCACCTGATGGAACTAAAACTCAAGTATCTTCTAAGACAGATTTCTTAATTCCTAAGCCCTTAGATTCAAATATTGTTTTTGATGTTCGTCACATTGCATCTGGTGCACATCACCTTGCTATAGTGACTAGGAAAGGTGAGCTTTTTACTTGGGGAGAAGAATCTGGGGGAAGACTTGGTCATGGAATTGATAAAGATTTTGGCCAACCCCATCTAGTTGAGTTTCAAGAAGTTACTAATTTGGATTTTGTTGCATGTGGAGAGTTTCATACATGTGTTGTATCTAAATCTGATGATCTTTACACATGGGGTGATGGTACACATAATGTTGGACTTCTTGGCCATGGTACTGAGGCTAGCCATTGGATACCAAAGAAAGTTGATGGGGCTTTGGAAGGACTCCAAGTTGTCTCTATTGCATGTGGTACATGGCATTCAGCATTGGCAACCTCAAATGGAAAACTGTTTACATTTGGTGATGGAACATTTGGTGTCTTGGGCCATGGAGATCAAGAGAGTGTGTTGTATCCAAAGGAGGTACAATTATTAAGTGGACTAAAGACTATTAAGGTTGCATGTGGGGTATGGCACACTGCAGCTATTGTGGAGGTTATGTTTCAGTCTGGTTCAAATGTTTCATCATGGAAACTATTCACATGGGGTGATGGTGACAAATATCGTTTGGGTCATGGAAATAAGGAAACATACTTGCGACCCACACGTGTGTCTCCACTTATTGAGTATAATTTCCACCAGATAGCATGTGGGAACACTATGACTGTTGCTCTTACTACATCTGGTCATGTTTTTACAATGGGAAGCACTGAAAATGGTCAGTTAGGAAATCCTTTGTCCGCTGGAAAAGTACCTACTCTAGTCCAAGATAAGTTGCTTGGTGAGTTTGTTGAGGAAATATCATGTGGGGCACATCATGTTGCTGCCTTAACATCAAGAAGTGAACTATATACTTGGGGAAAAGGTGGTAATGGAAGATTAGGACATGGAGACATAGAAGATAGGAAAACTCCTACACTAGTGGTAGCCTTGAAAGATAGGCACATAAAAAATATCTCATGTGGCTCAAACTTTACATCTTGTGTATGCATCCATAAATGGGTCTCTGGAACTGATCAATCTGTTTGCTCTGGTTGTCGACAAGCATTTGGTTTGACAAGAAAAAGACATAATTGTTATAATTGTGGATTGGTTTACTGCCATAATTGCAGTTCAAAAAAGGCATTCAAAGCAGCATTGGCTCCAACACAAGAGAAACCCCATCGAGTGTGTGATACTTGTTATGCAAAGCTTAAAGTTTTTGAGGCTGGGGATACTTCCAAGTTTAGTGGAAAAAGTTTTCCTTCTCATTGTTCCACTTCCACATATTGCAAGGAAAGATTAAGCCAGACAGCAAGAATGTCTACAAGTAAACTCTTGTCTCCCATCACTGAACCAGTGAAATACCTTGAGATAAAGAAAAATAAGCCCGGAACATGTGGTTCAACTTACTTTGTCCGAGCTTCTCAAGTTCCATCTCTTGTACAATTGAATGATATTGTATTTCCAAGTTCACTAAGTTCTGCTCAAAGTGTTTTGAAGCCTATTACACCTCCTAGTCCATCAGAAAGTCCTCCAACAACTCCACCTATTAATTCAAGACACACGTCGCCATACAAGAGAAGATCAAGCCCTCCACGTTCTGCTAGTCCTAGATTTTCTGGAAGCCTTATCAGTAGTTTGAGAAAGACAAATGATGTTTTGAAGCAAGAAGTCTCCAATTTGCATAACCAAATTCGAAGTTTGGAGCAAAGAAGTGACATGAAGGGTGTGGAAATTCAAAGGCTTCAGAGAAAGGCTACGGAAGCTATTGCTTTGGCTGCAGTGGAATCTTCTAATCTTAGAGAAGTAACAGAATTTATTGAATCTACTATGGATCAGGTAAAGGAAATGATTGAGAAATTACCATTAGAAATTCCAGAAAGTAAACTTTTGATTAGCGTGCATACTCGAGCTACAGACTTTCTACAAGAAATTTCAGAATCTGAAACATCTTCCTTACCATCAAATTTGGAGTCAGATCAAGAAAATAAACCTAATGTACCTACTTTAGATAGTGACACTTCTAAATTGCAAGAACACAACTCGGAAGAAAATGACGATGTTGCAGGCGTTAACAGTTGTCAAGATGGAAAACATTTCCCTGAAGAAATTAATGGTTCAAAGCTGAAGTCTGAGCAACAAGATGAACATGATATAACTGCCTCAAATAGTGACTGTTCAAATATGCAAGAAAACAAACTAGAAGAAAATGTTGATGCTGCAGGAGTTAACACTTGTCAAGATGGAAGAAATTTCCCTGAAGAAATTAATGGCCCAAAATTAGAGTCTGAGCAACAACATGATATAACTGCCTTAGATAGTGATTGTTCAAAACTGCAAGAACAAATATTAGAAGAAAATGTTGATGCTTCTAAAGTTGATACTTGTCAAGATGGATCAAAGTCTGAGTCTGAGCAACAAGATGCACCTACTACACCTTCCTCAAATAGTGACTGTTCAAAACTACAAGAAAATAGACTAGAAGAAAATGTTGATGTTGTAGGAGTTGACCTTTGTCAAGATGCAGGGAATTTCCTTGAAGAAAATATTATATCAAAGTTAGAGGCTAAGCAGCAAAATGCACCTAATATACCTGCCTCAGACAGTGGCACTTTTCAACTCCAAGAACATAGACTAGAAGAAAATGTTGATGGTGCAGAAGTTGATCAATCTCCAGCAAAGGGACATGGATTCCAAGAATACAATGGATCATCTATGTCTACTGCTGAAGATGTAGTGCCTCCACAAAACTCAGAAAAATATGGTTCAAGATCACTGGATTCTTTAGGATCTGGGAGACAACGAGAAACACAAGTCATAGAAAAATTCGAACGTGGTGTTTATGTGATACTTGTGTTACAGCCTGATGGTGTCAAAATTTTTAAACAAGTTAAATTCAGTAAGCGAAGGTTCACTGAAAATGAAGCAGAAGAATGGTGGAAGCAAAACAAAGTGGATCAATTCAAAAGGTTCATCAACAATGGTGGGGGACTTGGGAAGAATTAA 3243 0.3879 MQPRISVGDGFRVSAASSSNSSGGSEPDDIESLGDVYIWGEVLADEVSPDGTKTQVSSKTDFLIPKPLDSNIVFDVRHIASGAHHLAIVTRKGELFTWGEESGGRLGHGIDKDFGQPHLVEFQEVTNLDFVACGEFHTCVVSKSDDLYTWGDGTHNVGLLGHGTEASHWIPKKVDGALEGLQVVSIACGTWHSALATSNGKLFTFGDGTFGVLGHGDQESVLYPKEVQLLSGLKTIKVACGVWHTAAIVEVMFQSGSNVSSWKLFTWGDGDKYRLGHGNKETYLRPTRVSPLIEYNFHQIACGNTMTVALTTSGHVFTMGSTENGQLGNPLSAGKVPTLVQDKLLGEFVEEISCGAHHVAALTSRSELYTWGKGGNGRLGHGDIEDRKTPTLVVALKDRHIKNISCGSNFTSCVCIHKWVSGTDQSVCSGCRQAFGLTRKRHNCYNCGLVYCHNCSSKKAFKAALAPTQEKPHRVCDTCYAKLKVFEAGDTSKFSGKSFPSHCSTSTYCKERLSQTARMSTSKLLSPITEPVKYLEIKKNKPGTCGSTYFVRASQVPSLVQLNDIVFPSSLSSAQSVLKPITPPSPSESPPTTPPINSRHTSPYKRRSSPPRSASPRFSGSLISSLRKTNDVLKQEVSNLHNQIRSLEQRSDMKGVEIQRLQRKATEAIALAAVESSNLREVTEFIESTMDQVKEMIEKLPLEIPESKLLISVHTRATDFLQEISESETSSLPSNLESDQENKPNVPTLDSDTSKLQEHNSEENDDVAGVNSCQDGKHFPEEINGSKLKSEQQDEHDITASNSDCSNMQENKLEENVDAAGVNTCQDGRNFPEEINGPKLESEQQHDITALDSDCSKLQEQILEENVDASKVDTCQDGSKSESEQQDAPTTPSSNSDCSKLQENRLEENVDVVGVDLCQDAGNFLEENIISKLEAKQQNAPNIPASDSGTFQLQEHRLEENVDGAEVDQSPAKGHGFQEYNGSSMSTAEDVVPPQNSEKYGSRSLDSLGSGRQRETQVIEKFERGVYVILVLQPDGVKIFKQVKFSKRRFTENEAEEWWKQNKVDQFKRFINNGGGLGKN 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi154g00094 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 93 144 IPR000408 -
Sebi154g00094 1080 SMART fyve_4 414 485 IPR000306 GO:0046872
Sebi154g00094 1080 MobiDBLite consensus disorder prediction 976 1013 - -
Sebi154g00094 1080 MobiDBLite consensus disorder prediction 1 29 - -
Sebi154g00094 1080 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 422 484 IPR017455 -
Sebi154g00094 1080 PRINTS Chromosome condensation regulator RCC1 signature 145 161 IPR000408 -
Sebi154g00094 1080 PRINTS Chromosome condensation regulator RCC1 signature 361 382 IPR000408 -
Sebi154g00094 1080 PRINTS Chromosome condensation regulator RCC1 signature 303 321 IPR000408 -
Sebi154g00094 1080 PRINTS Chromosome condensation regulator RCC1 signature 95 111 IPR000408 -
Sebi154g00094 1080 PRINTS Chromosome condensation regulator RCC1 signature 202 216 IPR000408 -
Sebi154g00094 1080 PRINTS Chromosome condensation regulator RCC1 signature 186 202 IPR000408 -
Sebi154g00094 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 200 251 IPR000408 -
Sebi154g00094 1080 MobiDBLite consensus disorder prediction 576 620 - -
Sebi154g00094 1080 MobiDBLite consensus disorder prediction 725 807 - -
Sebi154g00094 1080 ProSiteProfiles BRX domain profile. 1016 1071 IPR013591 -
Sebi154g00094 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 314 365 IPR000408 -
Sebi154g00094 1080 Gene3D - 9 155 IPR009091 -
Sebi154g00094 1080 Gene3D - 156 260 IPR009091 -
Sebi154g00094 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 145 199 IPR000408 -
Sebi154g00094 1080 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 417 499 IPR013083 -
Sebi154g00094 1080 Pfam FYVE zinc finger 418 483 IPR000306 GO:0046872
Sebi154g00094 1080 SUPERFAMILY RCC1/BLIP-II 33 419 IPR009091 -
Sebi154g00094 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 34 92 IPR000408 -
Sebi154g00094 1080 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 21 681 - -
Sebi154g00094 1080 MobiDBLite consensus disorder prediction 780 798 - -
Sebi154g00094 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 146 195 IPR000408 -
Sebi154g00094 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 92 141 IPR000408 -
Sebi154g00094 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 313 362 IPR000408 -
Sebi154g00094 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 264 310 IPR000408 -
Sebi154g00094 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 367 413 IPR000408 -
Sebi154g00094 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 199 248 IPR000408 -
Sebi154g00094 1080 MobiDBLite consensus disorder prediction 881 899 - -
Sebi154g00094 1080 FunFam PH, RCC1 and FYVE domains-containing protein 1 6 253 - -
Sebi154g00094 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 366 417 IPR000408 -
Sebi154g00094 1080 MobiDBLite consensus disorder prediction 583 597 - -
Sebi154g00094 1080 Coils Coil 623 664 - -
Sebi154g00094 1080 MobiDBLite consensus disorder prediction 12 27 - -
Sebi154g00094 1080 SUPERFAMILY FYVE/PHD zinc finger 418 484 IPR011011 -
Sebi154g00094 1080 MobiDBLite consensus disorder prediction 820 847 - -
Sebi154g00094 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 262 313 IPR000408 -
Sebi154g00094 1080 Gene3D - 261 416 IPR009091 -
Sebi154g00094 1080 MobiDBLite consensus disorder prediction 869 899 - -
Sebi154g00094 1080 MobiDBLite consensus disorder prediction 725 754 - -
Sebi154g00094 1080 MobiDBLite consensus disorder prediction 598 620 - -
Sebi154g00094 1080 Pfam Transcription factor regulating root and shoot growth via Pin3 1016 1063 IPR013591 -
Sebi154g00094 1080 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 238 248 IPR000408 -
Sebi154g00094 1080 MobiDBLite consensus disorder prediction 961 1013 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi154g00094 Sebi-Chr154 1410877 1415954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi154g00094 993 1063 Major Intrinsic Protein MIP AT1G31880 32.432 5.25e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi154g00094 - - lang:109340921 1268.83