LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi154g00082	ATGGATGATAAACGTGGAACATCTCATCTCAAAACTAATGATCATTTTCGAATTGAAGTTGATAGCTTTTCACCTCCTTCTTCAATGCCCTTTTCTCCCTCATCAATTTTTGCTTCTTACTCTGATTTTCCACCTGGTTTCAGCCCAACAGCGTTGTTTAATTCACCTCTGTTTCTCTCTTCTCCTAATATGGCTGCACCTTATACAACTGCTGAGCCTTCTTCTGGTCAGACTCAGAGCTTCAACCAGAGAAACAGTTCAACTGAACAACATAACAACAAGGAAGAAGAGAGAAAGTACTCTGACATCTCTTTCCAGACCCAAACAAAGCAGCAAGTGCCTCTCTTTCAATCTTCCCCAAGCATGTTTCAAGCAGAGCCAATAAAGAAACAGGACAAGTTGATATTCAATGAAACTACAAAGCAAACCGATTTTTCATTTCAGAGGACGGCAACAAAATCTGAGAATCCATCCACTCAAGGCTTCTCCTCAGAACTGGCCACAATCAAACCTGAAATACAAAGCATTTCTGCTTCTGGGTCTGGTTATTCAAACTACACAAATGCTTCTATGTCTATTAGAGAACAAAGGAAATCAGAAGATGGGTACAAGTGGAGGAAATATGGAGAGAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGTTATTACAAGTGCACACATTCAAGTTGTCCAATGAAGAAAAAAGTTGAAAGGTCTTTGGATGGACATATTACTGAAATAGTATACAAAGGAAGTCATAACCATCCCAAGCCACAGTCTACCAAAAGAACAAATTCTCACTCAATTCATCAACCCTCTTCATCATGTACTAACTCAGGGATTTCTGATCATTCTATGGGAGAGGAAGACTTTGAGCAAACATCACATACTAGTTATTGTGGAGGGGATGATGATGACCTTGGACCAGATGCCAAAAGATGGAAGGGAGAGAATGAAAATGATGGCTATTCCTATTCAACTGCAGGGAGTAGAACTGTTAAGGAGCCTAGAGTTGTGGTTCAAACCACAAGTGAAATTGATATACTTGATGATGGCTATAGGTGGAGGAAATATGGACAGAAAGTGGTCAAAGGAAACCCAAATCCAAGAAGCTACTATAAATGTGTAACCCCTGGTTGTCCAGTGAGAAAACATGTTGAGCGAGCTGCACATGATATGAAAGCTGTGATAACAACTTATGAAGGGAAACACAACCATGATGTGCCTGTAGGGCGAGGAAGTGCAAGCTATGGCATGAACAGGAACAACAACACCAACAATGTTACTGCCCCTGCCCCTATAAGGCCCTCACTGGTGACTAATTATTCTAGCTCAGCAAGTTTGACAAATTCACTTCATGATACAAAGTTACCAACTTCTGGAAGTCAAGAACCTTTTCAGCTTGACATGCTTCTGAGCCCTGGAAGCTTTGGATTTGCAGCTCTGGACAGATCAATGAGTTCATATGCCAATCCTGAACAATACTCAGATGCTACATTCTCTAAGGATGACTCATTCCTTCAATCTTTTCTCTCAAAGAACTTCTAA	1548	0.405	MDDKRGTSHLKTNDHFRIEVDSFSPPSSMPFSPSSIFASYSDFPPGFSPTALFNSPLFLSSPNMAAPYTTAEPSSGQTQSFNQRNSSTEQHNNKEEERKYSDISFQTQTKQQVPLFQSSPSMFQAEPIKKQDKLIFNETTKQTDFSFQRTATKSENPSTQGFSSELATIKPEIQSISASGSGYSNYTNASMSIREQRKSEDGYKWRKYGEKQVKGSENPRSYYKCTHSSCPMKKKVERSLDGHITEIVYKGSHNHPKPQSTKRTNSHSIHQPSSSCTNSGISDHSMGEEDFEQTSHTSYCGGDDDDLGPDAKRWKGENENDGYSYSTAGSRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVTPGCPVRKHVERAAHDMKAVITTYEGKHNHDVPVGRGSASYGMNRNNNTNNVTAPAPIRPSLVTNYSSSASLTNSLHDTKLPTSGSQEPFQLDMLLSPGSFGFAALDRSMSSYANPEQYSDATFSKDDSFLQSFLSKNF	515

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Sebi154g00082	515	Pfam	WRKY DNA -binding domain	350	406	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Sebi154g00082	515	Pfam	WRKY DNA -binding domain	200	256	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Sebi154g00082	515	MobiDBLite	consensus disorder prediction	303	319	-	-
Sebi154g00082	515	MobiDBLite	consensus disorder prediction	89	103	-	-
Sebi154g00082	515	MobiDBLite	consensus disorder prediction	63	88	-	-
Sebi154g00082	515	SMART	WRKY_cls	199	257	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Sebi154g00082	515	SMART	WRKY_cls	349	408	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Sebi154g00082	515	FunFam	WRKY transcription factor	187	259	-	-
Sebi154g00082	515	ProSiteProfiles	WRKY domain profile.	200	258	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Sebi154g00082	515	ProSiteProfiles	WRKY domain profile.	344	409	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi154g00082	Sebi-Chr154	1212311	1215594	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi154g00082	147	480	WRKY Transcription Factor Family	AT2G38470	52.432	2.61e-106	325

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Sebi154g00082		WRKY	1.3e-24	CL0274

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi154g00082	K13424		-	gmx:100127367	688.337

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