Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi154g00066 ATGAAGCAAGTGGTAGGAATGGTGGTTTCCAATAAGATGCAAAAGTCGGTGGTGGTGGCAGTTGATAGACTATTCTACCACAAAGTGTACAACCGATATGTCAAGCGCACCTCTAAATTTATGGCTCATGATGAGCACAATCATTGTAACATTGGTGACCGAGTTCGTCTGGATCCTTCTAGGCCTTTGAGCAAGCGCAAAAATTGGGTGGTTGCTGAAATTCTCAAGAAAGCACGCATATATGTTCCACCCTCCACACCAGTGTCTGAGAGTGTGAGCTCCAGCTCTCAAGCACCTGCATCCTGA 306 0.4608 MKQVVGMVVSNKMQKSVVVAVDRLFYHKVYNRYVKRTSKFMAHDEHNHCNIGDRVRLDPSRPLSKRKNWVVAEILKKARIYVPPSTPVSESVSSSSQAPAS 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi154g00066 101 PRINTS Ribosomal protein S17 family signature 20 43 IPR000266 GO:0003735|GO:0005840|GO:0006412
Sebi154g00066 101 PRINTS Ribosomal protein S17 family signature 62 69 IPR000266 GO:0003735|GO:0005840|GO:0006412
Sebi154g00066 101 PRINTS Ribosomal protein S17 family signature 52 62 IPR000266 GO:0003735|GO:0005840|GO:0006412
Sebi154g00066 101 Hamap 30S ribosomal protein S17 [rpsQ]. 1 76 IPR019984 GO:0003735|GO:0005840|GO:0006412
Sebi154g00066 101 NCBIfam 30S ribosomal protein S17 2 71 IPR019984 GO:0003735|GO:0005840|GO:0006412
Sebi154g00066 101 SUPERFAMILY Nucleic acid-binding proteins 2 88 IPR012340 -
Sebi154g00066 101 FunFam 30S ribosomal protein S17 1 100 - -
Sebi154g00066 101 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 80 IPR000266 GO:0003735|GO:0005840|GO:0006412
Sebi154g00066 101 Gene3D - 1 79 IPR012340 -
Sebi154g00066 101 Pfam Ribosomal protein S17 6 73 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi154g00066 Sebi-Chr154 1011047 1011451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi154g00066 6 75 Cytoplasmic Ribosomal Protein Gene Family AT4G30800 38.028 3.27e-06 41.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi154g00066 K02961 - qsa:O6P43_008958 160.229