Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi154g00021 ATGGACATGGACGTGGACGAAACTTCTGGACCCAAAGAGGGAAAGCCCGTTTTGGTCATCTTAGTAGGAGCACCCGGGAGCGGGAAGTCCACCTTCTGCGAAGAAGTTATGCGTTCACCTACTCGCCCTTGGGTTCGCGTTTGCCAGGACACTATAGGAAATGGTAAAGCAGGAAATAAAGCTCAGTGCTTAAGCAGTGCAGCTAGAGCATTGAAGGATGGGAAGAGTGTATTTATTGACAGGTGCAATCTTGACAGAGAGCAGCGCTCAGACTTTCTAAAGCTAGGTGATGGACCCCAAATAGATATCCATGCAGTTGTACTTGATCTTCCTGCTAAGCTATGTATCTCTCGATCTGTCAAACGAACTGGGCATGAAGGAAATTTGCAGGGTGGAAAAGCTGCTGCAGTTGTGAATAGAATGCTTCAAAAGAAAGAGCTGCCCAAATTAAGTGAAGGCTTTAATAGGATAACATTTTGTCAGAGTGAGAATAATGTCAAAGACGCTATTAATACATACAGCGCACTTGGGCCACTGGATAACCTTCCACATGGCTGCTTTGGCCAGAAGAATCCAGATTCCAAAATTCAAGTTGGTATAATGAAGTTCCTAAAAAAGGCAGAGGTCCCAGTTAATGCTGCACCTAGAGAGAATGCCATTGGAGACTCTACTTCCCAGACTCCTGCACAAATTGATTCCCACTGCAAAGATATGGAAAAAGTTCCCTCAATTCCAGATAATACCAACATAGAGTCAAAGGACTTAGAAGGCCAGGCTGTTGGCTCTGTGGGTTCCCATGACAATCAAGTTTCGTTGGATGATACTCCTACTCTAGCATTTCCTTCTATATCAACATCTGATTTCCAATTCAACCATGAGAAGGCTGCTGATATTATTGTTGAGAAGGTTGCAGAATTTTCAAATAAGCTTGTGAATGCCAGACTTGTTCTAGTTGACTTGACTCATAAGTCAAAGATTCTATCCTTAGTTAAAGCCAAAGCAGCAGAAAAAAGCATTGACACCCAAAAGTTTTTTACCCATGTTGGAGACATTACTCATCTTTATTCTGCAGGAGGTTTGCGCTGTAATGTCATAGCTAATGCTGCGAACTGGCGGTTAAAACCTGGAGGTGGAGGTGTTAATGCAGCAATTTTTAATGCTGCAGGTCCAGAACTGGAGTCTGCAACCAAAGAAAAAGCAAAATCTCTTTCACCTGGGAATGCTGTTGTTGTCCCTCTACCTTCATCTTCTCCTTTGTTCACTAGAGAGGGTGTAACCCATGTAATACATGTTCTTGGACCGAATATGAACCCACAAAGACCAAATTATCTGAACAATGATTATAATAAAGGCTGCAAAATTCTCCGAGATGCATATGCTTCACTTTTTGAAGGTTTTGCATCAATTGTGAGGAACCAGGCTGAGCAGCCTAGGGGAAAAAAAGAAAACCTTGGAAAAAAGTCTTTGGAGTTGCAGGATCAGTCTGACTGTACTAGAAATCCTTTTGCAAATAATGATCAAAAGAGTAAGAGAGATGCTGATCATGGATCAGAAAAAAGCAAGAAATACAAGGGAACTCTGGATGGTTTTGGGTTGACCTTTACAGATTCTAGGGATAAAAAGGTAGATTCAGAGCGTAGAAGAACTGATGAGAGCATGAGTAAGGCTTGGGGATCATGGGCTCAAGCTCTTCACCAAATAGCTATGCATCCTGAAAAGCATAAGGATGACTTACTTGAAATTTCAGAAGATGTTGTTGTATTGAATGATCTGTATCCTAAGGCACAGAAGCATGTTCTGGTATTGGCACGAACTGAAGGTCTTGATAGCCTGGCAAATGTCCAAAATGAGCACCTTCAGTTGTTGAAGAAGATGCATGCTGTGGGTTTAAAGTGGGCTGAGAAGTTCTTGCAAGAGAGTGCTTCACTTGTATTTCGTCTTGGATATCACTCGGTTCCATCAATGCGACAACTACATTTACATGTTATTAGCCAGGATTTTGATTCAAAACATTTGAACAACAAGAAGCATTGGAACTCGTTTAACAGTGATTTCTTTCGTGACTCGGTAGATGTAATTGATGAGATCACTAATCATGGGAAGGCAACATTGAAAGATGACAAGCTACTGTCTATGGAGTTGAGATGCCACAGATGTAGAAGTGCGCATCCAAACATACCCAGGCTAAAATCACATATTAGCAGTTGCCAAGCTCCCTTTCCTGCTTACCTACTTCAAAACGGACGTTTGGTACTTCCACCAGGAGCAGCTATGGCCTGA 2280 0.4215 MDMDVDETSGPKEGKPVLVILVGAPGSGKSTFCEEVMRSPTRPWVRVCQDTIGNGKAGNKAQCLSSAARALKDGKSVFIDRCNLDREQRSDFLKLGDGPQIDIHAVVLDLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGFNRITFCQSENNVKDAINTYSALGPLDNLPHGCFGQKNPDSKIQVGIMKFLKKAEVPVNAAPRENAIGDSTSQTPAQIDSHCKDMEKVPSIPDNTNIESKDLEGQAVGSVGSHDNQVSLDDTPTLAFPSISTSDFQFNHEKAADIIVEKVAEFSNKLVNARLVLVDLTHKSKILSLVKAKAAEKSIDTQKFFTHVGDITHLYSAGGLRCNVIANAANWRLKPGGGGVNAAIFNAAGPELESATKEKAKSLSPGNAVVVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPNYLNNDYNKGCKILRDAYASLFEGFASIVRNQAEQPRGKKENLGKKSLELQDQSDCTRNPFANNDQKSKRDADHGSEKSKKYKGTLDGFGLTFTDSRDKKVDSERRRTDESMSKAWGSWAQALHQIAMHPEKHKDDLLEISEDVVVLNDLYPKAQKHVLVLARTEGLDSLANVQNEHLQLLKKMHAVGLKWAEKFLQESASLVFRLGYHSVPSMRQLHLHVISQDFDSKHLNNKKHWNSFNSDFFRDSVDVIDEITNHGKATLKDDKLLSMELRCHRCRSAHPNIPRLKSHISSCQAPFPAYLLQNGRLVLPPGAAMA 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi154g00021 759 Gene3D Leucine Aminopeptidase, subunit E, domain 1 335 475 IPR043472 -
Sebi154g00021 759 FunFam Transcription factor bHLH140 6 175 - -
Sebi154g00021 759 MobiDBLite consensus disorder prediction 476 493 - -
Sebi154g00021 759 FunFam Transcription factor bHLH140 324 471 - -
Sebi154g00021 759 Gene3D - 559 739 IPR036265 -
Sebi154g00021 759 MobiDBLite consensus disorder prediction 476 524 - -
Sebi154g00021 759 Pfam Scavenger mRNA decapping enzyme C-term binding 566 677 - -
Sebi154g00021 759 ProSiteProfiles Macro domain profile. 331 531 IPR002589 -
Sebi154g00021 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 160 IPR027417 -
Sebi154g00021 759 ProSitePatterns HIT domain signature. 646 664 IPR019808 -
Sebi154g00021 759 SUPERFAMILY Macro domain-like 325 464 IPR043472 -
Sebi154g00021 759 Gene3D Leucine Aminopeptidase, subunit E, domain 1 268 334 IPR043472 -
Sebi154g00021 759 Pfam Macro domain 366 448 IPR002589 -
Sebi154g00021 759 SMART YBR022w_8 343 622 IPR002589 -
Sebi154g00021 759 PANTHER APRATAXIN-RELATED 278 736 - -
Sebi154g00021 759 MobiDBLite consensus disorder prediction 505 524 - -
Sebi154g00021 759 Gene3D - 3 175 IPR027417 -
Sebi154g00021 759 FunFam aprataxin isoform X2 558 737 - -
Sebi154g00021 759 SUPERFAMILY HIT-like 552 720 IPR036265 -
Sebi154g00021 759 Pfam AAA domain 18 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi154g00021 Sebi-Chr154 219144 223866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi154g00021 13 751 C2H2 Transcription Factor Family AT5G01310 58.593 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi154g00021 K10863 - gmx:100786762 1271.14