LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi153g00046	ATGACATGGGTGATGGGTGGTGCAGCTTCTTTCAAGCCATTCACCGTCACATTCCCCATCATCGTCACCGCGCTCATTCTAATTAGCCCCCGGAATATTATGGCCGCAAGACCCGACGACGAAGATTCAAAAGAAAACACAATTCCCTCTCTCGAAGACTACAGCACGTCACCGCCGGCTGCGTCACCCACCGGCAATTCCGGTCACAAAGAGAGGAAACCGAACGCATTAAAGCCAAACGCCGCAGTGGTGGTGGGCGTTTTGACCATCACGTTTTCCCTCACCTTTCTCCTCCTCCTCTATATCAAGCACTGCAAAAGCGGGAGCACGTTCATTACCGGCAACGCGAATCAACGTTCCGACGAGAAAAAGAACTCCGGCGTTGACCGCGCGGTGGTGGAAGCGTTGCCGATTTTCCGATTCGGTTCGTTGAGGGGACAGAAAAACGGTCTAGAATGCGCGGTTTGTCTCACCGGTTTTGAGGACCCCGAAGTTCTGAGGCTGTTACCGAAATGCAAGCACGCGTTCCACGTGGAATGTGTTGACACGTGGCTCGACGCGCATTCAACGTGCCCTCTTTGTCGCGACAAGGTCGACCCTGAAGACTTTGTTCTGGTAGTGGAGCCGCGCCAAAACGCGAAGGAAGAAGAATCGCCGGAAAGTGGAAACAATAATAATAACGACAACGACGCACCGCAATCGGAAAATCTAGGGTCCCGGCGAGTCTCCGAGAGGCACTCGTCGGTGGGAGAGAGGGATGAGGAGTTTTTACAGATTGTTCTGCAGGAGAAGCAGGAACAGAATACGGAAACGTCGTCGTTTAGGAGGTCTTTGGATAATGCCTCTGGGGAAATAAAGAGCGTGGGGAAGAAGATGGAAACGTCGTCGTCTAGGAGGTATTTGGATAGTGCCACGGGGGGAATAAAGAGCGTGGGACAAAATATGGAAACGTCGTCGTCTAGGAGGCATTTGGATAGTGCCACGGGGGAAATAAAAAGCGAGGGGCAGAGGATGGAAACGTCGTCGTTGAGGCGTGACGGTGAGAGGACGAATGCGGAGCGGCACAGGTTAGAGCACCGTATAATTATCTCCCATTCTTTCTCACGAGGTGGGGTCCACGAGCGGTGGAGCGATGTTCAGCCGTCTGATTTGTTGTATTTAACCTCCGAGAAGATCATCAGCGATGCTTCCTCTTACTCGCGCAGAGGAAGAAGAACGGTGCGGGAGCAGAGACACAACGTTGATGATGAAATAGAGAACGGTTTTGGTGTTTGTGGTGGTGGGAGTGGAGTGATGAAGAATTTGAGGAGTGTTTCGGAGATGACGGGAATGAGCAGGTTTTTAAGGGGTAACAAGAGGGAGAGAGGTGGGAGGGAAGAACAAGAGCAGCAACGTGAGGGATCTGTTTCGAGGTGGTTGGGTTCGGTTTCCAGGTCACAAACACGACGAGGAGATGTGTCTTAG	1464	0.5225	MTWVMGGAASFKPFTVTFPIIVTALILISPRNIMAARPDDEDSKENTIPSLEDYSTSPPAASPTGNSGHKERKPNALKPNAAVVVGVLTITFSLTFLLLLYIKHCKSGSTFITGNANQRSDEKKNSGVDRAVVEALPIFRFGSLRGQKNGLECAVCLTGFEDPEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRDKVDPEDFVLVVEPRQNAKEEESPESGNNNNNDNDAPQSENLGSRRVSERHSSVGERDEEFLQIVLQEKQEQNTETSSFRRSLDNASGEIKSVGKKMETSSSRRYLDSATGGIKSVGQNMETSSSRRHLDSATGEIKSEGQRMETSSLRRDGERTNAERHRLEHRIIISHSFSRGGVHERWSDVQPSDLLYLTSEKIISDASSYSRRGRRTVREQRHNVDDEIENGFGVCGGGSGVMKNLRSVSEMTGMSRFLRGNKRERGGREEQEQQREGSVSRWLGSVSRSQTRRGDVS	487

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi153g00046	487	MobiDBLite	consensus disorder prediction	448	487	-	-
	Sebi153g00046	487	Pfam	Ring finger domain	152	195	IPR001841	-
	Sebi153g00046	487	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ATL42	62	478	-	-
	Sebi153g00046	487	MobiDBLite	consensus disorder prediction	323	351	-	-
	Sebi153g00046	487	SUPERFAMILY	RING/U-box	148	200	-	-
	Sebi153g00046	487	MobiDBLite	consensus disorder prediction	261	280	-	-
	Sebi153g00046	487	CDD	RING-H2_EL5-like	152	195	-	-
	Sebi153g00046	487	MobiDBLite	consensus disorder prediction	49	64	-	-
	Sebi153g00046	487	MobiDBLite	consensus disorder prediction	37	74	-	-
	Sebi153g00046	487	MobiDBLite	consensus disorder prediction	448	466	-	-
	Sebi153g00046	487	MobiDBLite	consensus disorder prediction	467	487	-	-
	Sebi153g00046	487	ProSiteProfiles	Zinc finger RING-type profile.	153	195	IPR001841	-
	Sebi153g00046	487	MobiDBLite	consensus disorder prediction	218	238	-	-
	Sebi153g00046	487	MobiDBLite	consensus disorder prediction	298	322	-	-
	Sebi153g00046	487	FunFam	RING-H2 finger protein ATL43	128	202	-	-
	Sebi153g00046	487	MobiDBLite	consensus disorder prediction	210	351	-	-
	Sebi153g00046	487	MobiDBLite	consensus disorder prediction	239	260	-	-
	Sebi153g00046	487	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	127	202	IPR013083	-
	Sebi153g00046	487	SMART	ring_2	153	194	IPR001841	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi153g00046	Sebi-Chr153	1292348	1293811	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi153g00046	75	479	C3H Transcription Factor Family	AT5G05810	40.326	2.86e-71	230

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi153g00046	K19041		-	cave:132189697	307.76