Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi153g00042 ATGGCGAGGCAGAAGATAAAGATCAAGAAAATTGACAACGTAACGGCGAGGCAAGTGACGTTTTCAAAGAGAAGGAGAGGGATCTTCAAGAAAGCTGAAGAGCTTTCTGTGCTGTGCGATGCTGAGGTTGGTCTTGTTATTTTCTCAGCTACTGGGAAGCTTTATGAATACGCTAGTTCCAGTATGAAGGGCATAATTACAAGGTATAAACAGCACTCTCAAAGCATCAACGAATTGGACAGACCTCTAGAACTGCAGCTAGAGAATAATAACAAGATAGCTGAATTGCATAAGGAAGTTGCTGATAAAACCCAACAACTAAGGAGGATAAAAGGTGAGGATTTTCAAGGGCTAAACTTGGATGATTTGCAGCAACTGGAGAAAACACTTGAAACGGGACTCAAGCGCGTGATTGAGATCAAGGAAAAGAAGATTATGGATGAGATTGTTGCACTTCAGAAGAAGGGAAACACGTTAGAAGAGGAGAACAACCATTTGAAGCAAAAGATGGCTGCTATGCTGTGTAAGGGAAGAAGTCCTTTCCTGGTGGATTCAGATATTACCATGCAGGAAGTTGTCTCATCAGATTCTATGAATAACGTCTGCAGCTGCAATAGTGGCCCTTCTCTTGAAGATGATTCCTCTGACACATCTCTCAAGTTAGGGTTGCCCTTCCCTAAAAATTGA 687 0.4207 MARQKIKIKKIDNVTARQVTFSKRRRGIFKKAEELSVLCDAEVGLVIFSATGKLYEYASSSMKGIITRYKQHSQSINELDRPLELQLENNNKIAELHKEVADKTQQLRRIKGEDFQGLNLDDLQQLEKTLETGLKRVIEIKEKKIMDEIVALQKKGNTLEEENNHLKQKMAAMLCKGRSPFLVDSDITMQEVVSSDSMNNVCSCNSGPSLEDDSSDTSLKLGLPFPKN 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi153g00042 228 Coils Coil 93 113 - -
Sebi153g00042 228 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi153g00042 228 Coils Coil 123 169 - -
Sebi153g00042 228 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Sebi153g00042 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi153g00042 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Sebi153g00042 228 Pfam K-box region 89 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi153g00042 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sebi153g00042 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sebi153g00042 228 FunFam Transcription factor, MADS-box 13 83 - -
Sebi153g00042 228 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Sebi153g00042 228 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Sebi153g00042 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sebi153g00042 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi153g00042 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi153g00042 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sebi153g00042 228 MobiDBLite consensus disorder prediction 204 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi153g00042 Sebi-Chr153 1141479 1152393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi153g00042 1 224 MADS-box Gene Family AT4G24540 55.947 9.67e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sebi153g00042 K-box 3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi153g00042 - - vvo:131620668 332.413