Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi153g00030 ATGACAGGTCTCTGTACAGAAATTTGTAGCTGGTTTTGGAATTATGATTTGAAAACAGTATCTACTCATCCTTGTGAAGGAAACTTGAAAGGATGCAAAGGTGTCAAGGGTGCACAACCTGGTCTAGTTCTCTCATGGGCTCAAAGAGTTAAAATTGTTGTTGGTGCAGCTAGAGGACTTGAATATCTTCATGAAAAGGCAGAGACTCATATTATCCTTCGTTACATTAAGTCTAGTAACATAATGCTTTTCGATGATGATGTTGCAAAGATTGCTGATTTTGATTTGCCAAATCAAGCCCCTGATGCAGCAGCACGCACGACTTCATTCTACCCGTGTTCTTGGAACCTTTGGTTATTATGCTCCAGAATCCGCGACAGCCTCTGCCACGAGAAAGCCCTCATCTCCGGCGAACAGAGTGCCACACACAGCCATCGTCTTCCACCTCCGTCGCACCATGGATCCAACCACCACCACTGCGTGCAGTCCGAACAGCCCCCATCCTCCCGCACCGCCGCTAACCCATCAGCCATCACCGTTGTGGAACTCCCTCCGTTCGAACGAGCACCGCGTCCCGCCACCGGAGTCCGCCGCTCTCGCAGCCACCATCATCTTCCTCGATTAGCATCCACCACCGCGCCGTTCGCGCGCCACCGTGCCTTTCTCTCGCACCCCGTGACTGTGCGCTCACCAGCCACCACCGTGAGGGTCACAGCCGCAACGTTTCCAACGTCAAAAGCAGCAACCACGCATGAACCGCGCCCTCTAGCCCACCGTTGGTCTGTCGCAGTCGCTACAGGTGACCGAGCCTACCGCCGCGCCGTGAGCTGCGCTCCATCACCGGTCCAAAAACTGCGATCCGTGTGGTGCGACATGCAGAGAGGTGACGGTGTGGTGGTGCGGCGACTGTCTGTCAGTGAGATTGGAGGCAGCGGTGGCCGCAACCATATAAAAATTGTTTGTAACAGGGAGGTGGTTGCGATGCAAGGAGTTAGCTGTGCCCGACCATTAGAGAGGCGGTATATAGGTGACTGTGATTCCCTTCAAAAATATCTGGATATCGACTTTCAAGGGGTGCAAGGCTGGACTCAGGTTGGTTGCATTCTTGGCCAAATCAAAGGTGTTGATGGAGCTGGTTCTTCTATTGCTATCAGAATAGTTGGATTAGGAAGAGTTCAAATTATGATGAGGCACCTTGCATCTGTTGGAGAAACCTATATTGCCTTTGAATATGCTTCTTGA 1242 0.5169 MTGLCTEICSWFWNYDLKTVSTHPCEGNLKGCKGVKGAQPGLVLSWAQRVKIVVGAARGLEYLHEKAETHIILRYIKSSNIMLFDDDVAKIADFDLPNQAPDAAARTTSFYPCSWNLWLLCSRIRDSLCHEKALISGEQSATHSHRLPPPSHHGSNHHHCVQSEQPPSSRTAANPSAITVVELPPFERAPRPATGVRRSRSHHHLPRLASTTAPFARHRAFLSHPVTVRSPATTVRVTAATFPTSKAATTHEPRPLAHRWSVAVATGDRAYRRAVSCAPSPVQKLRSVWCDMQRGDGVVVRRLSVSEIGGSGGRNHIKIVCNREVVAMQGVSCARPLERRYIGDCDSLQKYLDIDFQGVQGWTQVGCILGQIKGVDGAGSSIAIRIVGLGRVQIMMRHLASVGETYIAFEYAS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi153g00030 413 ProSiteProfiles Protein kinase domain profile. 1 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi153g00030 413 MobiDBLite consensus disorder prediction 186 205 - -
Sebi153g00030 413 Gene3D Transferase(Phosphotransferase) domain 1 30 117 - -
Sebi153g00030 413 MobiDBLite consensus disorder prediction 140 172 - -
Sebi153g00030 413 Pfam Protein tyrosine and serine/threonine kinase 44 115 IPR001245 GO:0004672|GO:0006468
Sebi153g00030 413 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 26 109 - -
Sebi153g00030 413 SUPERFAMILY Protein kinase-like (PK-like) 40 105 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi153g00030 Sebi-Chr153 563705 570341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi153g00030 1 101 Receptor kinase-like Gene Family AT5G61350 39.604 5.20e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Sebi153g00030 PK_Tyr_Ser-Thr 9.3e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi153g00030 K13436 - gmx:547595 137.887