Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi152g00057 ATGGTCAGAGCCGCGGTTCGATTAAGTTCCACCATGTTCTCCTCTTCAATACCTCTCAAAAACCCTAACTTACTCTTCCCTTCATCTCCAACCCGCTTCCATGCTATTTCTCTTCCCCCGCATTCCATTTCCTTCTCCAACCGTCTCTCCCTTCGATGCTACGCTTCTCGCACCACCTTCCATCCAATTCCCGTTCTCAATCCCATTGTCGAAATGGACGGTGATGAAATGACAAGGATTATATGGAGGATGATAAAGGATAAACTTATATTTCCTTACCTGGATTTAAACATCAAGTATTTTGATTTGGGGGTTCAGAATCGCGATGCCACTGATGACAGAGTTACTGTGGAAAGCGCTGAGGCCACTCTCAAGTACAATGTTGCCGTGAAATGTGCAACAATAACTCCTGATGAGACCCGAGTCAAAGAGTTTGGACTGAAGTCGATGTGGAGAAGCCCCAATGGCACAATTAGGAACATTTTAAATGGTACTGTTTTCCGTGAACCCATAATATGCCGCAACATACCCAGAATTGTTCCTGGATGGAAAAAACCCATATGTATTGGTAGGCATGCTTTTGGTGATCAGTATCGTGCCACTGATACAATAATTAAAGGACCGGGGAAGCTTAAGTTGGTATTTGTCCCAGAAGATGGTGATACTCCCATGGAGCTTGATGTGCACAATTTCAAAGGCCCGGGTGTAGCGCTTGCTATGTACAATGTTGATGAGTCTATTCGAGCATTTGCTGAATCATCAATGTCACTGGCATTTGGAAAGAAATGGCCACTTTACTTGAGCACCAAAAACACAATTCTCAAGAAATATGATGGCAGATTCAAAGACATATTTCAGGAGGTGTATGAAGAAAGGTGGAAGCAAAAGTTTGAAGAACACTCAATATGGTATGAGCACAGGCTAATTGATGACATGGTGGCATATGCACTCAAGAGTGAAGGTGGATATGTTTGGGCTTGCAAGAATTATGATGGTGATGTCCAAAGTGATTTACTTGCTCAAGGATTTGGCTCATTGGGTCTCATGACTTCTGTGCTGATATCTTCTGATGGCATGACATTAGAAGCTGAGGCAGCTCATGGAACTGTAACTCGACACTTTCGGCTTCATCAAAAGGGACAAGAAACCAGCACAAACAGTATTGCTTCCATATTTGCATGGACTCGAGGACTGGAACATAGAGCCAAGCTGGATAATAATGAAAAATTACGGGATTTTACTCATAAGTTGGAGACTGCATGTGTTGAGACAGTGGAGTCAGGAAAGATGACCAAAGATCTTGCGATTCTGGTTCACGGACCCAATACGGTCTTGTGTGTCCCCTCTCTCAGAGCCAGAAACAAGTCTCTGCTTCATGCAACGCTTATGTCTCCTGATTCTCTCTCTTTGTTGGCCTCTGCGAACCTCAAAATGCAGAGCCTTTCTCTGTCACGTTCTCCTTCAACCCGCATAGCCATAGCCATAGCCAAGTTCCCTCTTCAACTCTCACACTCTCACCCTTTTTCTTTTTCACCACTCAGTTTCCCCATCAATGGACTTTCATACCCATCTTCTTCTTTGCTCCTCACTGCTCGAAAGCCTTCTCCTTTTCTCATTTCTACTCAAAAAATTGCATCTTTCAGAGTCCTTGCTGCTTCTGTGCCAGAGGCTAAAAGTGATGAGCCTAGTAAATCATCTGGGTTGACTCAGACTCTGCAGCTTGGGGTCATGATTGGGTTCACCACAGCTATGGCATCTAACCTTACTAATCAATCACGGAATGTTTTGAGCAAAAAACTAATGGCCAATGAAGAGGAAGCTTTGGACAATATCAATCTCTACTCAGTTATAACCATCATTTCCTTTATCCTATTGGTCCCATGTGCTATACTTATGGAGGGTGTCAAGTTTACTCCTTCATACTTGCAATATGCTGCAAGCCAAGGATTGAATGTTAGAGAGCTATGTGTGAGATCAGTTTTGGCTGCGTTCTGCTTCCATGCATACCAACAGGTTTCTTATGGAATATTAGGGATGGTATCACCAGTGACCCACTCAGTTGGAAATTGTGTGAAGCGTGTGGTGGTCATAGTCTCTTCAGTTATCTTCTTCCAAACTCCTGTCTCACACGTTAACGCACTTGGAACTGCTATTGCACTTGTTGGAGTTTTCTTGTATTCAAGGGCAAAACGGATTAAGACAATGCCAAAGACAAATGCAGCATAA 2226 0.434 MVRAAVRLSSTMFSSSIPLKNPNLLFPSSPTRFHAISLPPHSISFSNRLSLRCYASRTTFHPIPVLNPIVEMDGDEMTRIIWRMIKDKLIFPYLDLNIKYFDLGVQNRDATDDRVTVESAEATLKYNVAVKCATITPDETRVKEFGLKSMWRSPNGTIRNILNGTVFREPIICRNIPRIVPGWKKPICIGRHAFGDQYRATDTIIKGPGKLKLVFVPEDGDTPMELDVHNFKGPGVALAMYNVDESIRAFAESSMSLAFGKKWPLYLSTKNTILKKYDGRFKDIFQEVYEERWKQKFEEHSIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLISSDGMTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDNNEKLRDFTHKLETACVETVESGKMTKDLAILVHGPNTVLCVPSLRARNKSLLHATLMSPDSLSLLASANLKMQSLSLSRSPSTRIAIAIAKFPLQLSHSHPFSFSPLSFPINGLSYPSSSLLLTARKPSPFLISTQKIASFRVLAASVPEAKSDEPSKSSGLTQTLQLGVMIGFTTAMASNLTNQSRNVLSKKLMANEEEALDNINLYSVITIISFILLVPCAILMEGVKFTPSYLQYAASQGLNVRELCVRSVLAAFCFHAYQQVSYGILGMVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSHVNALGTAIALVGVFLYSRAKRIKTMPKTNAA 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi152g00057 741 FunFam Isocitrate dehydrogenase [NADP] 60 453 - -
Sebi152g00057 741 Pfam Isocitrate/isopropylmalate dehydrogenase 65 437 IPR024084 -
Sebi152g00057 741 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 62 442 - -
Sebi152g00057 741 Pfam Triose-phosphate Transporter family 577 727 IPR004853 -
Sebi152g00057 741 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 329 348 IPR019818 GO:0000287|GO:0016616|GO:0051287
Sebi152g00057 741 Gene3D Isopropylmalate Dehydrogenase 63 453 - -
Sebi152g00057 741 SMART Iso_dh_2 68 444 IPR024084 -
Sebi152g00057 741 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 65 443 IPR004790 GO:0004450|GO:0006102
Sebi152g00057 741 NCBIfam isocitrate dehydrogenase (NADP(+)) 63 441 IPR004790 GO:0004450|GO:0006102
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi152g00057 Sebi-Chr152 1617026 1639304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi152g00057 404 738 Antiporters AT5G33320 43.466 6.64e-60 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi152g00057 K00031 - gmx:100819151 805.438