Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi152g00055 ATGATTTCCTCACAAAGCTCTGTTCTCATTCCACCACCACAGAATAACCCTTTGTTGAGTCACTCCAACAATTCGCACCATTTTCAGGGCTATAACCTAAACTTGAATGTGCCAAACCACAACCCTGCTCTTATGATGGAACCTTCCTCTATCATCAACCCATTATATGATATCTCAACCCTTTCCTTGGATGATGATGTCACAATTACACCAAATAACAACCAAATGGATGCTATGCATGGCAACCATGATGAAATCATCTTGGATTTCTCACGATGGACTGTAATTGGAGAGGAACACCCACATATCACTGAAAATGGTGATGATCACAACAGGGATGACTCTGATCATGATGATGATCAAATGGATGAAAATGTGCAAAATGATAGCAACACTACTAACATAATAAAAGGACAGTGGTCACCAAGTGAGGACAAGGCTCTTGTGAATTTGGTGAAACAACATGGATTGAAGAAATGGGCTATAATTGCAAAATCAATGGAGAGAAGGATTGGGAAGCAATGCCGAGAGAGGTGGCACAATCATCTCCGACCAAACATTAGGAAGGATTCATGGACCCTAGAGGAAGACATGATACTGATCAAAGCCCACCAAGAACTTGGAAACAAATGGGCTGAAATTGCAAAAAGAATGCCTGGTAGGAGTGAGAACAACATCAAGAACCATTGGAATGCCACCAAGCGGCGCCAAAACTTCAACAGACAAAATAAGAAGCCTGACACTCGTAAAGGATCACTACTTCGTGCCTACATAAAAATTGTCATTGAAGCTGAAGAAGTCGCTGCATATAAGATGAAGAAATCCATAAGCAACATGGAGATGAAGATGTTGAGAGGTTGCGATGAACATCTAGCTAATCTTTTCTTGGAAATTAATCTATTAAATGATGAAGGTTATGGTCATGAGGTGAAGAAGCAGCACCATATGATCAATGGAAATGGTGGTTACAAGCCAATGCTGCATGGAATCCCAAATGGGTCTGTGAACATTGACTATGGTGCAATGGTGAAAAGGTTGGGGCTTGAAGATGAGAAGAAGGGGTAG 1065 0.4113 MISSQSSVLIPPPQNNPLLSHSNNSHHFQGYNLNLNVPNHNPALMMEPSSIINPLYDISTLSLDDDVTITPNNNQMDAMHGNHDEIILDFSRWTVIGEEHPHITENGDDHNRDDSDHDDDQMDENVQNDSNTTNIIKGQWSPSEDKALVNLVKQHGLKKWAIIAKSMERRIGKQCRERWHNHLRPNIRKDSWTLEEDMILIKAHQELGNKWAEIAKRMPGRSENNIKNHWNATKRRQNFNRQNKKPDTRKGSLLRAYIKIVIEAEEVAAYKMKKSISNMEMKMLRGCDEHLANLFLEINLLNDEGYGHEVKKQHHMINGNGGYKPMLHGIPNGSVNIDYGAMVKRLGLEDEKKG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi152g00055 354 MobiDBLite consensus disorder prediction 101 117 - -
Sebi152g00055 354 MobiDBLite consensus disorder prediction 101 137 - -
Sebi152g00055 354 PANTHER MYB PROTEIN-RELATED 118 247 - -
Sebi152g00055 354 CDD SANT 191 234 IPR001005 -
Sebi152g00055 354 Gene3D - 190 254 - -
Sebi152g00055 354 Gene3D - 136 188 - -
Sebi152g00055 354 SUPERFAMILY Homeodomain-like 134 230 IPR009057 -
Sebi152g00055 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 188 238 IPR017930 -
Sebi152g00055 354 FunFam Transcriptional activator Myb isoform A 136 189 - -
Sebi152g00055 354 ProSiteProfiles Myb-like domain profile. 132 183 IPR001005 -
Sebi152g00055 354 SMART sant 136 185 IPR001005 -
Sebi152g00055 354 SMART sant 188 236 IPR001005 -
Sebi152g00055 354 MobiDBLite consensus disorder prediction 1 24 - -
Sebi152g00055 354 ProSiteProfiles Myb-like domain profile. 184 234 IPR001005 -
Sebi152g00055 354 CDD SANT 140 183 IPR001005 -
Sebi152g00055 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 132 187 IPR017930 -
Sebi152g00055 354 Pfam Myb-like DNA-binding domain 137 183 IPR001005 -
Sebi152g00055 354 Pfam Myb-like DNA-binding domain 189 231 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi152g00055 Sebi-Chr152 1571003 1573894 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi152g00055 124 261 MYB Transcription Factor Family AT5G58850 51.333 3.18e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi152g00055 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi152g00055 K09422 - ccaj:109801641 251.521