Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi152g00049 ATGGCTGCCACAGCAACTGCCTCTTCAGTAGGTCCTCGATATGCACCACCAGACCCGACACTCCCTAAACCATGGCGTGGTCTTGTGGATGGCAAGACCGGGTATCTTTACTTCTGGAATCCTGAGACTAATGTTACCCAGTATGAGAGGCCTTCAAGCGCATCTGCCCCACCGAAGTCTTCAGTGCCTAGTTCTTCTGTCCAGGTTCAACAATCATCTCAAGGGCTGCAGCGTGGTCGCAGTCCTGATAATGATAGGTATGATAGAAACGGAAGTGGTGGGTCAAACGAAGGTGGATCACGGAACCATCAGAGTTCCAAAGGTGGAAGTTTTAGTTCTCACAATGTTCCAAATGGAACACATGTTGCTGGAAATGTTAGTTCGTCTACCAGAGCTCATGGGGCATCAGATGCTGGAGCTGGATTATCTCCAGAGTCTTATCGGCGTCGGCATGAAATAACTGTTACTGGAGATAATGTGCCTGCACCTCTTACATCATTTGGGTCTACTGGCTTTCCATCTGAGATTCTTAGAGAGGTACAAAATGCTGGGTTCTCAGCCCCGACTCCAATTCAGGCACAATCATGGCCCATTGCTCTTCAAAGTAGAGATATAGTTGCTATTGCTAAAACAGGTTCTGGGAAAACCTTGGGGTATTTAATCCCAGCATTTATTCATCTCAAACGCTGTGGTAATAATTCCAAAATGGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGGAAATCATCAAGAATTTCTTGTGCATGTTTGTATGGAGGTGCGCCAAAGGGTCCTCAATTGAGAGATATTGACCGTGGAGCTGATATTGTGGTAGCCACTCCTGGCCGGATGCTGGACATGGGTTTTGAACCTCAAATTAGGAAGATTGTGAATGAGGTGCCTGCCCGCAGGCAAACTCTCATGTATACTGCAACATGGCCTAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTGGTCAATCCTGTCCAGGTGAACATTGGCAATGTAGATGAGCTTGTTGCTAACAAGTCCATTACTCAGGATTGGAAGGACTGGGAGGGCTGGAGCCACTGGTGTAGCTTACACGTTCTTTGGGGGATCAGGATGCTAAATATGCTTCAGATCTCATCAAAGTCTTGGAAGGTGCAAACCAGCGGAGTCCCTCCAGAAATTCGTGATATGTCATCACGGGGTGGTGGGATGAGCAGATCAAGACGATGGGGTTCTGGCGGCCGTGGTGGACGTGGTGACTCTGGATTTGGTGCAAGGAATTATGACTCTGGATATGGTGGATGGAAGGGGTAA 1347 0.4788 MAATATASSVGPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSASAPPKSSVPSSSVQVQQSSQGLQRGRSPDNDRYDRNGSGGSNEGGSRNHQSSKGGSFSSHNVPNGTHVAGNVSSSTRAHGASDAGAGLSPESYRRRHEITVTGDNVPAPLTSFGSTGFPSEILREVQNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFIHLKRCGNNSKMGPTALVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRMLDMGFEPQIRKIVNEVPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQDWKDWEGWSHWCSLHVLWGIRMLNMLQISSKSWKVQTSGVPPEIRDMSSRGGGMSRSRRWGSGGRGGRGDSGFGARNYDSGYGGWKG 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi152g00049 448 SMART ultradead3 184 362 IPR014001 -
Sebi152g00049 448 Pfam DEAD/DEAH box helicase 189 301 IPR011545 GO:0003676|GO:0005524
Sebi152g00049 448 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 130 363 - -
Sebi152g00049 448 MobiDBLite consensus disorder prediction 1 27 - -
Sebi152g00049 448 SUPERFAMILY WW domain 13 52 IPR036020 GO:0005515
Sebi152g00049 448 Gene3D - 11 58 - -
Sebi152g00049 448 MobiDBLite consensus disorder prediction 48 80 - -
Sebi152g00049 448 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 165 193 IPR014014 GO:0003724
Sebi152g00049 448 SMART ww_5 20 53 IPR001202 GO:0005515
Sebi152g00049 448 MobiDBLite consensus disorder prediction 48 146 - -
Sebi152g00049 448 Pfam WW domain 21 51 IPR001202 GO:0005515
Sebi152g00049 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 347 IPR027417 -
Sebi152g00049 448 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 345 IPR014001 -
Sebi152g00049 448 MobiDBLite consensus disorder prediction 400 433 - -
Sebi152g00049 448 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Sebi152g00049 448 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Sebi152g00049 448 Gene3D - 142 299 IPR027417 -
Sebi152g00049 448 Gene3D - 300 348 IPR027417 -
Sebi152g00049 448 MobiDBLite consensus disorder prediction 88 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi152g00049 Sebi-Chr152 1413409 1417043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi152g00049 163 376 Eukaryotic Initiation Factors Gene Family AT3G19760 28.980 1.41e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi152g00049 K12823 - gmx:100786511 598.586