Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi152g00044 ATGGATAAAAAACCGTGCAACTCATCTCAAGATCCTGAAGTGAGAAAGGGTCCATGGACCATGGAAGAAGACTTGATCTTGATCAACTATATTGCAAATCACGGTGAAGGTGTCTGGAACTCCTTAGCCAAAGCTGCTGGCCTTAAACGTACGGGAAAAAGTTGCCGACTCCGGTGGCTAAATTACCTCCGTCCTGATGTTAGAAGAGGGAATATTACACCAGAGGAACAACTTTTGATCATGGAACTTCATGCAAAGTGGGGAAACAGGTGGTCCAAAATTGCAAAGCATCTACCAGGAAGAACTGACAATGAGATTAAGAACTTCTGGAGGACAAGGATACAAAAGCACATTAAGCAAGCTGAGAACTTCCAACAACAGAGTAATTTAGAGATAAATGATCATCAAACAAGCACTAGCTGCAGCCAAGTGTCCACCATGGCAGAGCCCATGGAGACCTACTCTCCATCCTCATATCAAGGAACTTTGGAGCCATTTACAACTCATCAGTTCCCCACAATCACTGATCATCAATCAAGTTGTTGTACCAATGACAACAACTATTGGAGCATGGAGGATATCTGGTCTATGCAATTACTCAATGGGGATTAA 612 0.4297 MDKKPCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQAENFQQQSNLEINDHQTSTSCSQVSTMAEPMETYSPSSYQGTLEPFTTHQFPTITDHQSSCCTNDNNYWSMEDIWSMQLLNGD 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi152g00044 203 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Sebi152g00044 203 Gene3D - 73 144 - -
Sebi152g00044 203 SMART sant 15 65 IPR001005 -
Sebi152g00044 203 SMART sant 68 116 IPR001005 -
Sebi152g00044 203 Gene3D - 16 68 - -
Sebi152g00044 203 CDD SANT 73 112 IPR001005 -
Sebi152g00044 203 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Sebi152g00044 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Sebi152g00044 203 CDD SANT 18 63 IPR001005 -
Sebi152g00044 203 FunFam Myb-related protein 305 73 142 - -
Sebi152g00044 203 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Sebi152g00044 203 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Sebi152g00044 203 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Sebi152g00044 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Sebi152g00044 203 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 146 IPR044676 GO:0003700|GO:0006355|GO:0043565
Sebi152g00044 203 FunFam Myb transcription factor 16 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi152g00044 Sebi-Chr152 1136009 1139326 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi152g00044 10 203 MYB Transcription Factor Family AT3G01530 59.898 1.09e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi152g00044 Myb_DNA-binding 6.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi152g00044 K09422 - gmx:778046 375.17