Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi152g00002 ATGGAGTCTGGACGTCTTTATTTTGATACCTCTGCTTGTCGTGGGAACAACATGAACATGCTCTTCCTCGGGAATGCTGCTGATCTTGGTTTTCGAGGAAGGTCGATGATGAGCATGGAGGAAGGCTCAAAGAGGCGACCTTTCTTCAGCTCACCGGATGAACTGTATGATGAGGAGTACTACGAGGAGCAGTTGCCGGAAAAGAAACGCCGCCTCACTTCCGAGCAGGTCCATCTGTTGGAGAAGAGCTTTGAGGAAGAAAACAAACTGGAGCCAGAGAGGAAGACCCAGTTGGCCAAGAAGCTGGGGCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAGAACCGCAGGGCTAGATGGAAGACCAAGCAACTTGAGAGGGATTATGATGTTCTCAAGGCTTCCTATGATACCCTACTTTCAACATATGATTCCATTATGAAGGAGAATGAGAAACTCAAATCTGAGGTGGCATCCTTAAATGAGAAGCTTCAAGTTGAAGCTAAAGAGATGCCAGGGGAGCCATTATCAGACAAGAAAGATGATCCACTTCCAGTAGATATAGCTCAAATTTTCAGCATGAAGGTGGAGGACCACATGAGTTCTGGAAGTGTTGGAAGTGCAGTGGTGGATGAGGGTAGTCCCCAGCTTGTTGTTGACAGTGTTGATTCATACTTTCCAGCTGATAATTATGTGGCCCCAGTTCAGACTCAGTCAGAGGAGGAGGATGGGAGTGATGATGGGAGGAGTTACTTAGATGTGTTTGTGGCATCTGAAACTGAGCAGCAAAACCATGAGGAGGGAGAGGCATTGAATTGGTGGGGTAATATGTATTATGTTGCATAA 846 0.4704 MESGRLYFDTSACRGNNMNMLFLGNAADLGFRGRSMMSMEEGSKRRPFFSSPDELYDEEYYEEQLPEKKRRLTSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDTLLSTYDSIMKENEKLKSEVASLNEKLQVEAKEMPGEPLSDKKDDPLPVDIAQIFSMKVEDHMSSGSVGSAVVDEGSPQLVVDSVDSYFPADNYVAPVQTQSEEEDGSDDGRSYLDVFVASETEQQNHEEGEALNWWGNMYYVA 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi152g00002 281 SMART HOX_1 66 127 IPR001356 GO:0003677
Sebi152g00002 281 FunFam Homeobox-leucine zipper protein HAT5 61 125 - -
Sebi152g00002 281 Coils Coil 136 170 - -
Sebi152g00002 281 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981|GO:0006355
Sebi152g00002 281 Pfam Homeobox associated leucine zipper 123 165 IPR003106 GO:0006355|GO:0043565
Sebi152g00002 281 CDD homeodomain 68 124 IPR001356 GO:0003677
Sebi152g00002 281 Gene3D - 61 130 - -
Sebi152g00002 281 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677
Sebi152g00002 281 Pfam Homeodomain 68 121 IPR001356 GO:0003677
Sebi152g00002 281 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 54 221 IPR045224 GO:0003700
Sebi152g00002 281 SUPERFAMILY Homeodomain-like 60 125 IPR009057 -
Sebi152g00002 281 PRINTS Lambda-repressor HTH signature 94 103 IPR000047 GO:0003677
Sebi152g00002 281 PRINTS Lambda-repressor HTH signature 103 119 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi152g00002 Sebi-Chr152 49491 51826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi152g00002 1 275 Homeobox Transcription Factor Family AT3G01470 60.714 1.43e-105 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi152g00002 Homeodomain 4.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi152g00002 K09338 - gmx:100797836 444.891