Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi152g00001 ATGGAACTCACCGATTCCACCGGCGGCGACCGCAACAACAACCCGCCGCCGTTGCAGCAGCAGCAGCAAGACTCTCGCTCCGGCCTCGGAATCGACCTCAACGAGATCCCTTCCCCTTCTTCTTCCTTCACTGAAACCCTACCGGACTTTGCCATTGACATCGTCCGTGCTTACCATGAGAACCCCGCTCCTCCTCCTGGCGGTCCTGCCGCCCTCCCCCGCGGTTTCACTCCCTGTTCCATCTGTACCAAGCCTGTTGGCACTGGAGTAAGCCAACAAGTCATTGTCTGTGACGGCTGTGAGCGCAGCTTCCACTTGGCCTGTGCCGGTATTCGCGGCGGCCGCCAGTCGTCGAGCCTTGATGAATGGGTCTGCGGCGAGTGTGTTTCCGGTGGGGTGAAGAGTAAAAGATGGCCACTCGGCGTCAAGTCCAAGCAGCTTCTTGATATTAACGCTTCGCCACCCAGTGATGCTGATGGGGATGGTGGTGGAGAGGAATCACAGGATTCAAGAAAGCACGCTCTGGGTGATAAATCTTTTGTTGCAAATCCATTTGGTGCCTCAGTGGCATATTCAAACTTCTACAACGGAAGTGCTTTTGGCTTTCAAAGGGCATCTGGAGTTTTGACACATGCTGTTAGAGTGGGTTTTGAGGATATATTGAATCATACACAATCAATTACTAGAAGTTTTGAGGAGGCCCTAAGAGATTTTATATCTGAAAGGCGCGGTGTACTAGAGGAAGGTTGGCGGGTGGAATTTAGACAATCAGTGAGCAGCTCTGAACTGTATGCAGTTTACTGTGCACCAGATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTTGTTATCTGGGGCTAACGTCTGGCTACAATTCTATGGAATCTGAAATAAGAAATGAAAGGTCTCTGCCTTCTTTAGGTGGGCCTCACATGTCCAGAAAAAGAAAGTCAGGAAAAACTTTAGTAGCCAATGGTTTTGCTGAAAAGTGTGGAACCTTGATCAACAGTAATTGTAAGGATACTCCTTCTGATGGTTTAAGTGTAGAATGTGCTAGTGCTCAGGGGAATGCCCCAGAAGCCACTGAAATTGGAAGACAAGTTGATGGTCATACTGGCCCTCAGCAATCTGCTGATGGACTTCCTCTACAGTTCAAGGACTTCTTTGTTCTTTCTTTGGGAAAGCTTGATGGGAGACCTTCATATTATGACGTTAACCTTATCTTTCCTGTAGGTTATAAATCTTGTTGGCATGATAAGATTACTGGCTCTCTTTTTACATGTGAGGTTTTGGAGGGTGGTGATTCTGGACCCATATTTAGGATCAGAAGGTGTTCCTGTTCAGAATTTCTTGTTCCTGTTGGGTCAACCATCCTCTCAGTATCAAATCTTTGTCAGTCTGTCAGTCAAACCAATGAAAAAGGTGAGAGAAAGACTGATGATAGTATGGGTTTAGATGGTGATGAAAGTATCCAGATGATGCTTTTAGACCCTTGTGCCCCAACAGAAAATGACGTCTTAAGTTGTGTTGCAAGGTTCTCAAATGAAGCATGTGATGATACTCATACATCAGATGTATTACAGCCTGTTGCCGGTTCTGTTCAAGATAATGCTAGAAATTTGTTAGCTGATAACATAGGGTTTATTGATGGAATTGGTGAAATTTTGGTGGAAGAACGGTCATCATCCTCTGCTTGGAGTGTTATGTCTCAAAAGTTAGTTAATGCTTGCAAAGATATCTGCAATCAGAAAGGAACTCTCAAATTCTATTGTAAACATGCTGAAAATGAAACATGCTTACATAAGTGGGATTTAAGGAATGGAAAAAGTGATACCCACTTTACTTCGTTGGATAAATTTTTTGGTTCACTTGGTTCAGTCAGCATCCCGGATGTAATTTATGCAGACAATGATCTGAAAGGTCTCTATGAGATGTTAGGAAAATGGTTGGAGCAGGATAGATTTGGATTAGATGTTGAATTTGTGCAAGAAGTATTAGAACAGCTTCCTGGTATCCAAGACTCTCTGCAGTATGAACTTCTGAATAGTAGAAGTAATAGCTCTTCATTGCCGACCGTAGAAAATGGTTTCCTAGTGGTTGAATGGAGAGGCGGATCAAAATACCAGGAAGAAGAAGCAGCTCAATGTTTATATGGGCCCAAGAAGGTGAAGTCAACTGAAAAATGCATTAGGGAAGATCGTTGTCCACCTCCTGGGAAGCCACTATGCTCTAGGGCTCCCAGTGAACTCATTGGTGACATTTTCCAGGCTTGGGAGCTTTTAGGGCGATTTCATGAAATTCTGGATCTGAAGGAATCATTGTCATTGAATGAGCTTGAAAAGGAACTTATCAACCCATGGTTTGATGGATTGGATTTTCTTGAGAAATCTGAGAAGGAAATGGATAGTAGTCAGGTTTTAAGTTCACAAGGAGCTGATGGTAATTGCAGACCACTGTCCTCAAGATGTGAAGCTGGTCCATCAGGTTCCACAGAAAGTTCCCATGCTTTTATTCAAGTGGAAACAGAAGCAATGAAAGAGGCAGCTCAAGTTAAGCTTGCTTCTTTCACTTATGCCAGATGCTTTGGTGTAGCCTTGACCAAGGCTCATAATTCATTACTAAGGGTGCTAATAGGTGAACTGCAATCAAAGGTGGCTGCCCTGGTGGATCCAAATTCTGAACCTGGAGAGACACGAACAAGACGGGGAAGAAGAAAAGATATAGATAGTTCAGCTCCTGCTAAACGAACCAAGCTCAATATGCTTCCTATTAATGAACTGACTTGGCCAGAATTAGCTCGTAGATATATCTTGTCTTTTTTATCAATGGATGGTAAGCTCGAGTCTGCTGAAATTACTGCTCGTGAGAGTGGTAAAGTATATCGATGCTTACGAGGTGATGGTGGTTTGCTGTGTGGTTCACTTACTGGTGTGGCTGGAATGGAAGCTGATGCACTGTTGCTTGCAGAGGCTACAAAGAAGATTTTTGGTTCTTTGAGCAGAGAAAATGATGTACTAACCATGGAAGAAGATGAGTCTGATGCAAAGGGTGCTTCTGAAAAAAATTTGGGGAATGATGGTAATATTCCTGAATGGGCACAAATGCTGGAACCTGTCAGAAAGCTACCAACAAATGTTGGAACCCGAATCAGAAGGTGTGTTTATGATGCTCTGAGTAAGGATCCGCCTGAGTGGGCGAGAAAAATACTGGAGCATTCAATTAGTAAGGAAGTGTACAAGGGCAATGCATCTGGACCAACAAAGAAAGCAGTGCTTTCAGTGTTGGCTGATGTAGTTGGTGAAGGAATGCAGTCGAATCCCAATAAAGGAAGGAAAAAGAAGATTGTTATATCTATTTCTGACATTATCATGAAACAATGTCGCATTGTATTACGCCGTGCAGCTGCTGCAGATGATTCAAAGGTTTTTTGCAATTTGCTGGGAAGAAAATTAATAAATTCTTCCGATAATGATGATGAAGGGCTTCTTGGATCTCCAGCTATGGTGGCTCGTCCTCTTGACTTCCGGACTATTGATCTAAGATTGGCCTCTGGAGCTTATGGTGGATCTCATGAAGCTTTTCTCGAGGACATGCGTGAGCTATGGAACAATGTTCGTGTTGCTTTTGGGGATCAACCTGATTTAGTTGATCTGGCTGAAAAGTTGTCCCAGAATTTTGAATCGTTATACAATGAGGAGGTGATCACTTATGTTAAAAAATTTGGGGAGTATGCTAAACAGGAGTGCTTAAGTCCAGAAATGAAAAAAGAAGTTGACAGTTTTATTGTTTCAACAAGTGAGATTCCGAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGATAGGGATGATGACAGTGTTCTACTATGTGATACTTGTGATGCTGAGTATCATACGTATTGTTTGAACCCTCCACTTGCAAGGATCCCTGAAGGAAACTGGTACTGTCCTTCTTGTCTTGATGGTAAACGTGCAACTCAAGATGTTACAGAACGTCCACAGATTATTGGCAAGCGCCGAAGTAAAAAAATCCAGGGAGAAGTTAATTGTCTTTACTTGGAAGCTCTAACTCATTTATCTACTACAATTGAAGAAAAAGAATACTGGGAGTACAGTGTGGGTGAGAGAACCTTCCTTCTCAAGTTTTTATGTGATGAGTTGCTTAACTCCTCCCTGATACGCCAGCATCTTGAGCAATGTGCAGAGTTGTCTGTTGAGTTACATCAGAAATTGCGTGCACTTTCTGTAGAGTGGAAAAATCTGAAAGCAAAAGAAGATATTTTATCTACAAAAGCTGCCAAAATTGATACATTTTCACTAAACACCACCGGAGAAGTTGGTTTTAAGGACTCAAATGCTGGTAAATGTCAGGTGCAGGCACACACTGCAGCTGACAATCCTAGTAGTTTTGGGGTATTTGTTGATAGTGTGCCTTCAGAAGAGATTACTGAAGAGAAATATAGGTTCAATAGTGTTGATAAAAGTGTATCTGTGACAAATTCAGATTCTGATAGCCAAAATATGAATTCCATAGATGTAGAGGGACAACTTAGGAATGTTTCTTTGGCTGTGGAGTCTCTGTGTACTGATAAATCCCCCAAGTCTTTTCCATCACCAAATTGTTTGCCACAAGACATAAATGGTTCTGTTGGAGCAGCTCATATCCAGGGTAACCACCAGAAATGTGAGGGAAGGGATGTATCTACACTTGGGACATACCAGCAAGGACAATGTGTGCCTGTTGAAGTTCCTCAGATTGCTGTGAATGAGTCAGAACCCTACCACCTTGAACTCAATGCCATCAGACGTGATATCTCAGTACTGCAGGACTCCATAACTAGCGTAGTATCACAGCTGCTGAAGCTCTCTGTTCGCCGGGAATTTTTGGGTATTGATTCCATTGGTCGGCTGTACTGGTCTATGGCTACGCCCCGGGGGCGTTCACGTATAGTTGTTGATGCAAGTTCTGTACTGCCTCATGGAAGAGGAGTAGCAGTTACCAAAGACTCTATGGAGAAGTTTTCTGTTCTGCAGCATTGTGCACTATCTGACAAGGATAACTATAAGATGTTAGGGATGATCAAGGACTCTCCTTTAATGTCTCAACCAAGTAACGCTTTAGGCAATGGTTCACCATGGATTGCTTATGAAACTGATGCAGAAATTGAAGAACTTTTAGGTTGGCTAAATGATAATGACCCTAAAGAAAGAGAACTGAAAGATGCTGTTATGCTGGGGCCAAAATCAAGATTTCAAGAGTTAGTTAATGTACAGACTGAAAGTCAGGTTGAGGAGCAGGGACCTATTTCTATGCCAACAAATAGAGAGAAAACAGTATCTAATTCTCTTGTTACAAAGGCCACTTCCTTGCTGGAAAAGAAGTATGGTCCCTTCCTTGAGTGGGATACTGTTGAGGTGTTGAAGAAGCAAAGTAAAAAGACCAGATCAACTAATGATGAAAAGTTGTACAGGTGTGAGTGTCTAGAACCTGTATGGCCGTCTAGGAAACACTGCATGTATTGCCACAAAACTGTTTTGGGTGATGTTGAATTTGAGGGACACAATGATGGCAAATGTAATGCAGGTCTTCCGGCTTTGGACAAGAATAAGGATAAAAATGGATCTTCTAAAGGAAGAGGGAACTTGAAATGTGATACCTCACATGAAAAATTCAGAGCTGATGCAGAAACTGCTGGAACCTCAATTAATAGATCTTCCAAGCTTAGTTCAAGATTGATTAAATTTTCAAATGAAGAATCCACATGCCCATTTAACTTCGAAGATATATGTATGAAGTTTGTGACAAATGATTCCAACAAGGAACTTGTCAGAGAAATAGGTCTTATTGGTACAGATGGTATCCCGTCCTTTGTTCCCTCCATATCTCCTTTTGTTAGTGATTATACACTATCCTCTGCTCAAAAGGATGATAGGGTTGTTGGTGGTGTGTCCAAAGCATCAGAAAGCCAGGGTTCACAGGGAAACACTGATGGAGCAGGCATATGTCATGATCATAAATTAGGCATATGTACTGAAAGGTTAGCTGCAAATGAAAGCAATAATGCAGGAAAATCCAACAAATCATCTTTGGGAGAACAAAGAGATGGAAGGTTTTCTTTTTGTAGTCCTGCTTTAGATATGGGAGTTGATGGCTGCTGTGTGGTCCCTTTGTCTTCCTTGAAACCATTAGTTGGAAAAGTTTCTCATATTTTGAGGCAATTGAAGATTAATCTGCTTGATATGGATGCTGCACTACCAAAAGTGGCTTTAAGACCATCAAAGGCACAGTTGGAGAGAAGACACGCCTGGCGTGCATTTGTTAAATCTGCAGAGACTATATATGAGATGGTTCAGGCAACAATTGCACTGGAGGATATGATTAAGACAGAGTACTTAAGAAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCCAAATCTTCTACTTTGCCTTCCCTTGCCCTTCGCATATACTCCCTTGATTCAGCCATTATGTATGAGAAAATGCCAAATTCAAGTTTTAATGACAGCTCTGAACCTTCTGCCATAGCCGAACAGAAACGACAGACTGCTGTGGATGCAGAGAAATCCAAAGCAAGCCGGAAGTCGAACAGGAAAAGGAAGGAACAAGATGGTTGA 6651 0.4243 MELTDSTGGDRNNNPPPLQQQQQDSRSGLGIDLNEIPSPSSSFTETLPDFAIDIVRAYHENPAPPPGGPAALPRGFTPCSICTKPVGTGVSQQVIVCDGCERSFHLACAGIRGGRQSSSLDEWVCGECVSGGVKSKRWPLGVKSKQLLDINASPPSDADGDGGGEESQDSRKHALGDKSFVANPFGASVAYSNFYNGSAFGFQRASGVLTHAVRVGFEDILNHTQSITRSFEEALRDFISERRGVLEEGWRVEFRQSVSSSELYAVYCAPDGKIFDSVYEVACYLGLTSGYNSMESEIRNERSLPSLGGPHMSRKRKSGKTLVANGFAEKCGTLINSNCKDTPSDGLSVECASAQGNAPEATEIGRQVDGHTGPQQSADGLPLQFKDFFVLSLGKLDGRPSYYDVNLIFPVGYKSCWHDKITGSLFTCEVLEGGDSGPIFRIRRCSCSEFLVPVGSTILSVSNLCQSVSQTNEKGERKTDDSMGLDGDESIQMMLLDPCAPTENDVLSCVARFSNEACDDTHTSDVLQPVAGSVQDNARNLLADNIGFIDGIGEILVEERSSSSAWSVMSQKLVNACKDICNQKGTLKFYCKHAENETCLHKWDLRNGKSDTHFTSLDKFFGSLGSVSIPDVIYADNDLKGLYEMLGKWLEQDRFGLDVEFVQEVLEQLPGIQDSLQYELLNSRSNSSSLPTVENGFLVVEWRGGSKYQEEEAAQCLYGPKKVKSTEKCIREDRCPPPGKPLCSRAPSELIGDIFQAWELLGRFHEILDLKESLSLNELEKELINPWFDGLDFLEKSEKEMDSSQVLSSQGADGNCRPLSSRCEAGPSGSTESSHAFIQVETEAMKEAAQVKLASFTYARCFGVALTKAHNSLLRVLIGELQSKVAALVDPNSEPGETRTRRGRRKDIDSSAPAKRTKLNMLPINELTWPELARRYILSFLSMDGKLESAEITARESGKVYRCLRGDGGLLCGSLTGVAGMEADALLLAEATKKIFGSLSRENDVLTMEEDESDAKGASEKNLGNDGNIPEWAQMLEPVRKLPTNVGTRIRRCVYDALSKDPPEWARKILEHSISKEVYKGNASGPTKKAVLSVLADVVGEGMQSNPNKGRKKKIVISISDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVARPLDFRTIDLRLASGAYGGSHEAFLEDMRELWNNVRVAFGDQPDLVDLAEKLSQNFESLYNEEVITYVKKFGEYAKQECLSPEMKKEVDSFIVSTSEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCLDGKRATQDVTERPQIIGKRRSKKIQGEVNCLYLEALTHLSTTIEEKEYWEYSVGERTFLLKFLCDELLNSSLIRQHLEQCAELSVELHQKLRALSVEWKNLKAKEDILSTKAAKIDTFSLNTTGEVGFKDSNAGKCQVQAHTAADNPSSFGVFVDSVPSEEITEEKYRFNSVDKSVSVTNSDSDSQNMNSIDVEGQLRNVSLAVESLCTDKSPKSFPSPNCLPQDINGSVGAAHIQGNHQKCEGRDVSTLGTYQQGQCVPVEVPQIAVNESEPYHLELNAIRRDISVLQDSITSVVSQLLKLSVRREFLGIDSIGRLYWSMATPRGRSRIVVDASSVLPHGRGVAVTKDSMEKFSVLQHCALSDKDNYKMLGMIKDSPLMSQPSNALGNGSPWIAYETDAEIEELLGWLNDNDPKERELKDAVMLGPKSRFQELVNVQTESQVEEQGPISMPTNREKTVSNSLVTKATSLLEKKYGPFLEWDTVEVLKKQSKKTRSTNDEKLYRCECLEPVWPSRKHCMYCHKTVLGDVEFEGHNDGKCNAGLPALDKNKDKNGSSKGRGNLKCDTSHEKFRADAETAGTSINRSSKLSSRLIKFSNEESTCPFNFEDICMKFVTNDSNKELVREIGLIGTDGIPSFVPSISPFVSDYTLSSAQKDDRVVGGVSKASESQGSQGNTDGAGICHDHKLGICTERLAANESNNAGKSNKSSLGEQRDGRFSFCSPALDMGVDGCCVVPLSSLKPLVGKVSHILRQLKINLLDMDAALPKVALRPSKAQLERRHAWRAFVKSAETIYEMVQATIALEDMIKTEYLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDSAIMYEKMPNSSFNDSSEPSAIAEQKRQTAVDAEKSKASRKSNRKRKEQDG 2216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi152g00001 2216 MobiDBLite consensus disorder prediction 1006 1027 - -
Sebi152g00001 2216 MobiDBLite consensus disorder prediction 1762 1783 - -
Sebi152g00001 2216 ProSitePatterns Zinc finger PHD-type signature. 79 128 IPR019786 -
Sebi152g00001 2216 SMART PHD_3 78 129 IPR001965 -
Sebi152g00001 2216 SMART PHD_3 1277 1323 IPR001965 -
Sebi152g00001 2216 MobiDBLite consensus disorder prediction 1 44 - -
Sebi152g00001 2216 CDD PHD_SF 79 128 - -
Sebi152g00001 2216 MobiDBLite consensus disorder prediction 2175 2189 - -
Sebi152g00001 2216 CDD PHD1_Lid2p_like 1277 1322 - -
Sebi152g00001 2216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 137 IPR013083 -
Sebi152g00001 2216 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1357 1401 IPR028942 -
Sebi152g00001 2216 PANTHER OS02G0192300 PROTEIN 19 2212 - -
Sebi152g00001 2216 CDD Bromodomain 1123 1230 - -
Sebi152g00001 2216 MobiDBLite consensus disorder prediction 802 834 - -
Sebi152g00001 2216 ProSiteProfiles Bromodomain profile. 1168 1216 IPR001487 GO:0005515
Sebi152g00001 2216 SUPERFAMILY DNA-binding domain 237 290 IPR016177 GO:0003677
Sebi152g00001 2216 MobiDBLite consensus disorder prediction 895 912 - -
Sebi152g00001 2216 Gene3D - 381 494 - -
Sebi152g00001 2216 SMART bromo_6 1137 1235 IPR001487 GO:0005515
Sebi152g00001 2216 Pfam Bromodomain 1166 1221 IPR001487 GO:0005515
Sebi152g00001 2216 Pfam PHD-finger 79 129 IPR019787 -
Sebi152g00001 2216 Pfam PHD-finger 1277 1323 IPR019787 -
Sebi152g00001 2216 ProSitePatterns Zinc finger PHD-type signature. 1278 1322 IPR019786 -
Sebi152g00001 2216 MobiDBLite consensus disorder prediction 149 172 - -
Sebi152g00001 2216 ProSiteProfiles Zinc finger PHD-type profile. 76 131 IPR019787 -
Sebi152g00001 2216 MobiDBLite consensus disorder prediction 1865 1885 - -
Sebi152g00001 2216 MobiDBLite consensus disorder prediction 890 912 - -
Sebi152g00001 2216 ProSiteProfiles FYR domain FYRN motif profile. 380 433 IPR003888 GO:0005634
Sebi152g00001 2216 SUPERFAMILY Bromodomain 1112 1232 IPR036427 GO:0005515
Sebi152g00001 2216 Gene3D - 1119 1240 IPR036427 GO:0005515
Sebi152g00001 2216 MobiDBLite consensus disorder prediction 2193 2216 - -
Sebi152g00001 2216 MobiDBLite consensus disorder prediction 2175 2216 - -
Sebi152g00001 2216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1263 1345 IPR013083 -
Sebi152g00001 2216 Pfam Methyl-CpG binding domain 237 290 IPR001739 GO:0003677
Sebi152g00001 2216 ProSiteProfiles Zinc finger PHD-type profile. 1275 1325 IPR019787 -
Sebi152g00001 2216 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 236 303 IPR001739 GO:0003677
Sebi152g00001 2216 SUPERFAMILY FYVE/PHD zinc finger 75 140 IPR011011 -
Sebi152g00001 2216 SUPERFAMILY FYVE/PHD zinc finger 1263 1326 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi152g00001 Sebi-Chr152 34138 47268 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi152g00001 1 2216 C2H2 Transcription Factor Family AT3G01460 45.103 0.0 1763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi152g00001 Bromodomain 1.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi152g00001 K22768 - gmx:100791814 3437.12