Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi151g00055 ATGGGGAGTAGGGTTAGGCACGGGAGAAGATTACAGAAGATAATGAAGTGCCTGTGCCCAGGGGAGCCGGTAGGAAGAGCAGATGAAAAGGCTGATTCGTCGGAATCGCTTGCAACCAAGGATTATTATTCCTCAACGGCAAGTGGGATTTCTGGCCTAGATGGACAAGTTGAGAGTAGGCCAGATTCTGGCAATATAGAAGAAGCCGAATCATCCTTGCGTGAAAGTGGTATCTTGAACTATGAGGAAGCTAGAGCTTTGTTAGGAAGATATGAATATCAAGAAGGAAATATAGAAGCCGCATTACATGTTTTTGAGGGAATAGACATAGGCGCTTTGACTCCCAAGATAAAAAAATTCATTGCCAAAAACAGAGAACGCAGTAAGAGACGTTCCCGGAATTATGCTACTCCACCAATGTCTATACACACGGCTGGATTACTGTTAGAAGCAGTTTTCCTGAAAGCAAAATGTTTGCAGGTTCTTGGAAGGTTTAAAGAAGCAGCTCAAACATGCCAAGTTATTCTGGACATAATTGAGTCTTCATTACCTGAAGGCTTGCCTGAAAATTTTGGTGCTGAATGTAAGTTGCAGGAGACTTTGAGTAAGGCAGTTGAGCTACTTCCAGAACTATGGAAACTTGCTGATTGTCCACGCGAAGTTATTTTGTCTTACCGACATGCACTCCTTCATCAATGGAATCTTGATGCAGAGACCATAGCAAAAATTCAGAAAGAATTTGTTGCTTTTCTTCTGTATAGTGGAGGGGAAGAAATCCCCCCAAATCTTCGTTCCCATATGGACAGTTCATTTGTGCCCAGAAACAACATAGAAGAGGCTATACTTCTTTTAATGATTTTGCTAAGAAAAGTCTCTTTGAATAAAATTCAGTGGGATCCTTCAATTTTGGACCACCTTTCATTTGCTCTTTCTATTTCAGGAGATTTGACAGCTTTAGCCTATCAATGGGAAGAATTACTCCCTGGTACTATCAATCGAAGAGAAAGGTACCATGCCCTTGCTCTTTGTTATTATGGAGCAGGTAAGGACTTGGTAGCACTGGATCTTCTTAGAAAATTGTTGAGTAGCAGAGAGGACCCAAAACATGTTCCTGCTTTGTTAATAGCTTCTAAGATATGTTGTGAGAACCCTGATCTTGCAAATGATGGAGTAAGCTTTGCACGCAGATTGCTTGGGAATTTAGATGGAAGATGTGAGCAGTTGGAAAGTCTGGCCAATTGCTTACTTGGTGTTTCACTTTCAACTCACTCAAAAATAGCTATTTCTAATTCTGAGATGTTTGAGAGACAATCTGAGGCACTTCATTACCTGGAAACTGCCAGCAGAATGACCAGAATGAGTGACCCTCTTGTACTCTACTATTTCAGTTTAGAATGTGCAGAGCAAAGGAAGTTGGATGCTGCACATCAATATGCAAAACGCCTTTTAAACTTGGAAGCTGGGTCTAATATTAAAGGGTGGTTATTGTTAGCCCGGATATTATCAGCTCAAAAACAGTTTTTGGATGCTGAATCTATTGTTTGCGCTGCTTTGGATCAAACTGGAATATGGGATCAAGGAGATCTGTTGCGAACAAAAGCTAAACTGCAAATTGCACAGGGCCAGTTAAAAAGTGCCATTGAAACATATATTCAGCTTCTTGCTATTCTTCTAGTTCAGAGAAAAACTTTTGGTTCAAGAAAGAAGCTATATAAGGACTACAGAGATCATGCTAGGAACTTGGAAGTGGAAATATGGCATGATCTTGCTTATGTATACATAAGTCTGTCACAGTGGCATGATGCAGAGATGTGTCTTTCCAAATCCAAAGCCATCAAACTCTACTCTGCTTCCAGATGTCATATAATAGGCACAATATACGAAGCAAAGTGCCTTTATAAAGAGGCTCTAAAAGCTTTTCGTGATGCTTTGAACATTGATCCCGGACATGTCTCTAGCTTGATCTCCACTGCCGTGGTTCTTAGACGGTGCAGTAATCAATCAGATCCTGCTGTCAGAAGCTTTCTGATGGATGCACTGCGGCATGACAGATTTAATGCTTCTGCTTGGTATAATCTTGGCATTCTTCACAAGGCTGAAGGTAGAATGCTAGAAGCTGCAGAATGTTTTCAGGCAGCAAACTTTCTTGAAGAATCAGCACCAGTTGAACCTTTCAGATGA 2181 0.4099 MGSRVRHGRRLQKIMKCLCPGEPVGRADEKADSSESLATKDYYSSTASGISGLDGQVESRPDSGNIEEAESSLRESGILNYEEARALLGRYEYQEGNIEAALHVFEGIDIGALTPKIKKFIAKNRERSKRRSRNYATPPMSIHTAGLLLEAVFLKAKCLQVLGRFKEAAQTCQVILDIIESSLPEGLPENFGAECKLQETLSKAVELLPELWKLADCPREVILSYRHALLHQWNLDAETIAKIQKEFVAFLLYSGGEEIPPNLRSHMDSSFVPRNNIEEAILLLMILLRKVSLNKIQWDPSILDHLSFALSISGDLTALAYQWEELLPGTINRRERYHALALCYYGAGKDLVALDLLRKLLSSREDPKHVPALLIASKICCENPDLANDGVSFARRLLGNLDGRCEQLESLANCLLGVSLSTHSKIAISNSEMFERQSEALHYLETASRMTRMSDPLVLYYFSLECAEQRKLDAAHQYAKRLLNLEAGSNIKGWLLLARILSAQKQFLDAESIVCAALDQTGIWDQGDLLRTKAKLQIAQGQLKSAIETYIQLLAILLVQRKTFGSRKKLYKDYRDHARNLEVEIWHDLAYVYISLSQWHDAEMCLSKSKAIKLYSASRCHIIGTIYEAKCLYKEALKAFRDALNIDPGHVSSLISTAVVLRRCSNQSDPAVRSFLMDALRHDRFNASAWYNLGILHKAEGRMLEAAECFQAANFLEESAPVEPFR 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi151g00055 726 Gene3D Tetratricopeptide repeat domain 148 558 IPR011990 GO:0005515
Sebi151g00055 726 SUPERFAMILY TPR-like 334 556 IPR011990 GO:0005515
Sebi151g00055 726 Pfam Tetratricopeptide repeat 618 649 IPR019734 GO:0005515
Sebi151g00055 726 Pfam Tetratricopeptide repeat 687 713 IPR019734 GO:0005515
Sebi151g00055 726 Gene3D Tetratricopeptide repeat domain 559 722 IPR011990 GO:0005515
Sebi151g00055 726 ProSiteProfiles TPR repeat profile. 617 650 IPR019734 GO:0005515
Sebi151g00055 726 SMART tpr_5 617 650 IPR019734 GO:0005515
Sebi151g00055 726 SMART tpr_5 149 182 IPR019734 GO:0005515
Sebi151g00055 726 SMART tpr_5 687 720 IPR019734 GO:0005515
Sebi151g00055 726 SMART tpr_5 527 560 IPR019734 GO:0005515
Sebi151g00055 726 SMART tpr_5 583 616 IPR019734 GO:0005515
Sebi151g00055 726 SMART tpr_5 491 524 IPR019734 GO:0005515
Sebi151g00055 726 SUPERFAMILY TPR-like 529 713 IPR011990 GO:0005515
Sebi151g00055 726 ProSiteProfiles TPR repeat profile. 687 720 IPR019734 GO:0005515
Sebi151g00055 726 PANTHER PROTEIN NPG1 15 726 IPR043376 -
Sebi151g00055 726 MobiDBLite consensus disorder prediction 49 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi151g00055 Sebi-Chr151 888635 895124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi151g00055 9 726 Calmodulin-binding Proteins AT4G28600 57.162 0.0 765
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi151g00055 K21843 - gmx:100784353 1122.84