Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi151g00030 ATGTCGAACAAGTCCTCTGACTATGGGGATAGTGATGAGCTAGTAAGCCTCAATGGAAGTGATAGCTCGGATGATGACTTTGTGACAAAATGGCCTGAATTTAATGAGAAAACTGATTTGCATGATGAAGTAGAGCTAATGAAGGGAATGAAATTTGACTCTAATGTCACATTTAGAAAGGCCCTTATAGAGTGGACCATCAAGAGAGGTTATGATATTAAATACATTCATAATGACAAAAGCAGAGTCACTGCCATATGCAAGGATGGATGTGGATGGAGAATTCATGCTTCTCAAACACAAAACAACTTATGCTTCCAAATTAAAAGTTTCAACCCAATTCATCAATGTGGAAGACATTATGAAAACAAGAGGGTGACAACAAAGTGGGTTGCAAATAAGTACTTGGAAAATTTTCGGGATTCACCAAATTGGGAGGCTACCAGTTTGAAATATGCTTTACAAAGGGACCACAAGGAGGCAAGAGACAAACCTATCATTACAATGTTAGAGATGATTAGAAGACAATTAATGAAGAGATTTCATGTGAAGAGGGATGGAATGGTAGCCCGTAGACACTCAATATGCCCTAGAATACTTGAGAAGTTGGAAGTCTCTAAGAAAGATGCAATGAATTGTATAGTGTATGTTGGAGGGGATAGAACATTTGAGAGAGGAAGACCGGAAAATTATGTGGATGGAATCTTCTCAAAAGAAACTTTCTTGAAAACATATGATTGGCATATTCATCCTGTGCTTGGAGAAGAAGATTGGCCTGAGTGCAACTATGATAAGATCATACCTCCAAATGTAAAGGTTGCACCGGGTAGGCCCAAAAAGAAAAGAATCAGAGAAGAGGGAGAGCCTTCTAATGCACACAAGATTAGCAAGAAAGGCACCAAAATTAAGTGTGGTAATTGCAAGAAGGAAGGACACAATGCTAAAACATGCAAAATGCCTTTGAATCCAAATAGAAAGTCCACCCGGTGGACCGAGTCTTCCTCCATTGGCTACCCCACTCACTCCACCACCCAATCAGCTTTCGCCAAGTGGACAACCCGCGCCACCGACAATCACTTCCATGCGGCGGTGGACGACACCGCTCAGTGGCTCCTCAAGTACATCCTTTTCACAGTCCCATATCTCCACGACATCGAGAGTTCTCCCCAAACCCGAGACGCAACCACCGCCGTATCAGGCGATCCCGCCGCCCGGTTACGCGGCAAGGGGACGCCGCAAGACGAGCTGAGCGCCAACCACGTCCTGGCGGAGCGCCGGCGCCGCGAGAAGCTGAACGAGAGGTTCATCATTCTGAGGTCCCTTGTACCCTTCGTAACGAAAATGGACAAGGCTTCCATACTAGGAGACACCATAGAATACGTGAAACATGGCATAGTTGTCGTCCCCGTCGACGATTTCGCTTCTCAATTCCTTCTTGTCGGCGTTGAACGACAGCTACTGTTTCCTGATGAGCCTCTTGCCATATTGATGAACGAGCAGCGGCCAGGTCGGTGA 1515 0.4515 MSNKSSDYGDSDELVSLNGSDSSDDDFVTKWPEFNEKTDLHDEVELMKGMKFDSNVTFRKALIEWTIKRGYDIKYIHNDKSRVTAICKDGCGWRIHASQTQNNLCFQIKSFNPIHQCGRHYENKRVTTKWVANKYLENFRDSPNWEATSLKYALQRDHKEARDKPIITMLEMIRRQLMKRFHVKRDGMVARRHSICPRILEKLEVSKKDAMNCIVYVGGDRTFERGRPENYVDGIFSKETFLKTYDWHIHPVLGEEDWPECNYDKIIPPNVKVAPGRPKKKRIREEGEPSNAHKISKKGTKIKCGNCKKEGHNAKTCKMPLNPNRKSTRWTESSSIGYPTHSTTQSAFAKWTTRATDNHFHAAVDDTAQWLLKYILFTVPYLHDIESSPQTRDATTAVSGDPAARLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKHGIVVVPVDDFASQFLLVGVERQLLFPDEPLAILMNEQRPGR 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi151g00030 504 SMART finulus 421 470 IPR011598 GO:0046983
Sebi151g00030 504 PANTHER TRANSCRIPTION FACTOR TT8 304 462 - -
Sebi151g00030 504 Pfam MuDR family transposase 44 108 IPR004332 -
Sebi151g00030 504 MobiDBLite consensus disorder prediction 272 297 - -
Sebi151g00030 504 MobiDBLite consensus disorder prediction 318 338 - -
Sebi151g00030 504 Gene3D - 413 465 IPR036638 GO:0046983
Sebi151g00030 504 MobiDBLite consensus disorder prediction 390 415 - -
Sebi151g00030 504 MobiDBLite consensus disorder prediction 320 338 - -
Sebi151g00030 504 Pfam Helix-loop-helix DNA-binding domain 418 463 IPR011598 GO:0046983
Sebi151g00030 504 MobiDBLite consensus disorder prediction 279 295 - -
Sebi151g00030 504 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 415 464 IPR011598 GO:0046983
Sebi151g00030 504 MobiDBLite consensus disorder prediction 1 23 - -
Sebi151g00030 504 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 415 463 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi151g00030 Sebi-Chr151 489562 493448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi151g00030 276 463 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 38.947 1.14e-26 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi151g00030 DBD_Tnp_Mut 7.8e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi151g00030 - - dzi:111305184 189.119