Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi151g00004 ATGGCGAACCCTCAAAAGCCATGGAAAGCAGAGTACGCGAAGTCAGGGAGATCGTCATGCAGGACGTGCAAGATCCCCATTAACAGCGAGAAGCTCCGTCTCGGCAAGATGGTCCAATCCACCAAATTCGATGGCCTCATGCCTATGTGGAATCATGCTGATTGCATACTGAAGAAAGCCAACCAGATAAAATCAATTGATGATGTTGAAAACATAGAGTTGCTTCGTTGGGAAGATCAGCAGAAGATCAGAAAATACATAGAGAGCGGTGGCCCACCACCAAAATCAAATACTACCAAAGATACTGATTGTGGTATTGAAGTTTCACAAACTTCTCGTGCTACTTGCAGGCATTGTGGTCAAAAAATCATCAAAGGAGAGGTTCGGGTATCTACTAAGCCTGATGGTCAAGGTGCTAAGGGTTTGGCATGGCACCATGCCAAGTGTTTCATGGAATTATCACCATCAATTCAAGTGGATAAGTTGTCTGGATGGAATAGTCTCTCATCTTCTGATCAATCAGCTCTCAGTGATTTGGCTAAGAGGGGTCATCCTATGAATAAAGGAGATGGTAGTGGTACAAAGGTTGAGGCTGAAGAGGTTAAAGAATCCACTTCCAAAGGTGGCACCAAACGGGGGAAGGGTGCTGATGGTGAGCAGAAGTCAAAAGTTCCTAAGGCCAAGGGAAATGTGTCCGCGGGCAGGGCAGCATCAATGAAAAATACTGATGACTCAGGGGAAGCACATGATCTGGAGAATAAACTGGAGGCACAGAGCAAAGAACTCTGGGCTTTGAAGGATGATCTTAAGAAGAATGTGACAACGGCAGAGTTGCGTGAAATGCTGGAAGCCAATGGTCAAGATTCGACAGGATCAGAACTTGATTTGCGTGATCGCTGTGCTGATGGAATGATGTTTGGAGCACTTGGTCATTGTCCCCTATGTTCTGGTTTTCTGCGTTATTCTGGAGGAATGTACCGGTGCAATGGATACATTTCTGAGTGGAGTAAATGTTCCTACTCTACCTGCGAACCAAAACGTGCTGAAGGGAAGTGGAAAATCCCAGAGGAAACAAATAATCAGTACCTTAAAAAGTGGTTTAAATCTCAGAAGGGGAAGAAACCAGTTAGGATATTGCCTCTTCCGTCATCAAGGAATTCTGCTGAAGGTCAAATTAATGCCTGCCAGCCTCAATCATCAAACAGTGAAAGTTTGGGAGATTTGAAAGTTGCTATCTCTGGATTTCCTAAAGAGTCTATTGGGGAATGGAAACGCAAAATTGATGGCATAGGTGGAGTGTTTCATGCAAAACTGAAGAAAGATACTAGCTGCTTGGTGGTCAGTGGAGTGCTCAATGATGAAGCTGAGGTGCAGAAGGCAAGGAGGATGAAAATACCAATAGTCAGAGAGGACTATTTGGTTGACTGTATAGAAAGAAAGAGGAAGCTTCCATTTGATATGTACAAAGTTGAAATGATTGGTCAGGCTTCTAGCATGGTCACCATAAAAGTCAAGGGGCAAAGTGCTGTTCACGAGGCTTCTGGCCTACAGGATTCTGGCCACATACTTGAGGAAGGGAAAAGCATATATAATACAACTTTGAATATGTCTGATTTGTCTACTGGTGTTAACAGCTACTACATTCTCCAAATAATCCAAGAAGATAAGGGGTCAGGTTGCTATGTGTTTCGTAAATGGGGTCGAGTGGGAAATGACAAGATTGGAGGAACCAAACTGGACGAAATGCCAAAAGCTGATGCAATCTGTGAATTCAAACGATTATTCTTTGAGAAAACTGCAAACCCGTGGGAGGCTTGGGAACAAAAGACTATTCAGAAGCAACCTGGAAGATTCTTCCCACTGGAAATTGATTATGGAGTTAACAAACAAGGCCCTAAAAAAAATAAAAACAATGCAGAGAGCAAACTTCCCCCACCATTAATAGAATTGATGAAGATGCTCTTCAATGTGGAAACATACAGGGCTGCCATGATGGAATTTGAGATTAATATGTCTGAAATGCCACTTGGGAAACTGAGCAAAAGCAATATCCAGAAGGGGTTTGAAGCATTAACAGATATACAGAATCTGTTAAAAACTAGCAATCCTGATCCATCAATCAAGGAAAGCTTGCTTATTGATGCCAGCAATCGATTCTTCACTGTGATCCCTTCCATTCATCCACATATTATTAGGGATGAGGATGATTTTAAGTCAAAGGTTAAAATGTTAGAAGCCCTTCAAGACATTGAAATAGCCTCAAGATTAGTTGGATTTGATGCCAACAGTGATGACTCCATTGATGATAATTATAAGAAGCTCCACTGTGATATATCTCCACTTCCACATGACAGTGAAGATTTTTGTTTAATTGAGAAGTTTCTCCATACTACTCATGCCCCCACACATATGGATTGGAGTCTGGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGAGAACTTGATAAGTTTGCTCCTTACAGGAATAAACTCGGTAACAGAATGCTCCTATGGCATGGTTCAAGGTTGACAAACTTTGTTGGAATTATTAGCCAAGGACTCAGAATTGCACCACCTGAAGCCCCTGCGACTGGCTATATGTTTGGCAAAGGTATTTACTTTGCTGACCTGGTCAGCAAGAGTGCTCAGTATTGCTACACTGATAAGAAAAATCCTGTTGGTTTAATGCTTTTGAGTGAAGTTGCCCTTGGAAATGTTTATGAACTCAAAAAAGCTAAGTATATGGATAAACCTCCTGAAGGAAAGCACTCTACTAAAGGACTGGGCAAGAAAATGCCCCAGGAATCGGAATATGTAAAGTGGAGGGATGATGTCACCGTTCCTTGTGGCAAACCAGTCTCATCAAATGTCAAGGCATCTGAGCTGATGTACAATGAGTATATTGTTTATAATACTGCTCAAGTTAAGATGCAATTCTTGTTGAAGTCTCTTGAGCGTGACTCAATCAAAAAAGTGGATGTACAAGGGTGGCAGTGTACTAATTCAGCATTAGGAAGCGACAAAGAGCAGCAGTTCCCAGCCATCCATAAAGTGTTTGGTGCCAGCAATGTTTCCAAGTTGCTTTTGCATATACCAGCTCATGATCGTTGTGAAGCTGTTGTCACTATTGCTTATGAAGCTCAAGCTCGTATCAGAGACCCTGTTTATGGCTGTGTCTCCCACATTTTTGCCTTACAACAACAGGTGGCATGCTTGCAGGCACAATTGATGCAAGTGAAGGCTCAGCTGGCACAGAACATGATGGAATCAAGGAACATAGAGAATCAGTGGCCAGGGAATAATGTTAGTGGACAACCAATGAATCCATTTTGTCCAACTTACATGAATCCTATATCTCCTCAGAGTTCTCTTGAGTCAATTGATCATAGCAGCATGAATGATGGAATAATGGGAATGCAAGATATACAAAGCAGAGGGGATTTCTCATTCCAAGCTTGTTCTAAGAAAAGATCATATAACAATAATAATGACTTGGGTGAGCTGCAAGAATTGGCACTGAGGATGATGAGGAACTGA 3540 0.4206 MANPQKPWKAEYAKSGRSSCRTCKIPINSEKLRLGKMVQSTKFDGLMPMWNHADCILKKANQIKSIDDVENIELLRWEDQQKIRKYIESGGPPPKSNTTKDTDCGIEVSQTSRATCRHCGQKIIKGEVRVSTKPDGQGAKGLAWHHAKCFMELSPSIQVDKLSGWNSLSSSDQSALSDLAKRGHPMNKGDGSGTKVEAEEVKESTSKGGTKRGKGADGEQKSKVPKAKGNVSAGRAASMKNTDDSGEAHDLENKLEAQSKELWALKDDLKKNVTTAELREMLEANGQDSTGSELDLRDRCADGMMFGALGHCPLCSGFLRYSGGMYRCNGYISEWSKCSYSTCEPKRAEGKWKIPEETNNQYLKKWFKSQKGKKPVRILPLPSSRNSAEGQINACQPQSSNSESLGDLKVAISGFPKESIGEWKRKIDGIGGVFHAKLKKDTSCLVVSGVLNDEAEVQKARRMKIPIVREDYLVDCIERKRKLPFDMYKVEMIGQASSMVTIKVKGQSAVHEASGLQDSGHILEEGKSIYNTTLNMSDLSTGVNSYYILQIIQEDKGSGCYVFRKWGRVGNDKIGGTKLDEMPKADAICEFKRLFFEKTANPWEAWEQKTIQKQPGRFFPLEIDYGVNKQGPKKNKNNAESKLPPPLIELMKMLFNVETYRAAMMEFEINMSEMPLGKLSKSNIQKGFEALTDIQNLLKTSNPDPSIKESLLIDASNRFFTVIPSIHPHIIRDEDDFKSKVKMLEALQDIEIASRLVGFDANSDDSIDDNYKKLHCDISPLPHDSEDFCLIEKFLHTTHAPTHMDWSLELEEVFSLEREGELDKFAPYRNKLGNRMLLWHGSRLTNFVGIISQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCYTDKKNPVGLMLLSEVALGNVYELKKAKYMDKPPEGKHSTKGLGKKMPQESEYVKWRDDVTVPCGKPVSSNVKASELMYNEYIVYNTAQVKMQFLLKSLERDSIKKVDVQGWQCTNSALGSDKEQQFPAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNMMESRNIENQWPGNNVSGQPMNPFCPTYMNPISPQSSLESIDHSSMNDGIMGMQDIQSRGDFSFQACSKKRSYNNNNDLGELQELALRMMRN 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi151g00004 1179 Gene3D - 104 185 IPR036957 GO:0003677|GO:0008270
Sebi151g00004 1179 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 8 91 IPR001510 GO:0003677|GO:0008270
Sebi151g00004 1179 ProSiteProfiles LOB domain profile. 977 1084 IPR004883 -
Sebi151g00004 1179 SUPERFAMILY WGR domain-like 497 623 IPR036930 -
Sebi151g00004 1179 PANTHER DNA LIGASE 104 983 - -
Sebi151g00004 1179 SMART BRCT_7 403 480 IPR001357 -
Sebi151g00004 1179 Gene3D - 631 774 IPR036616 GO:0003950
Sebi151g00004 1179 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 104 184 IPR001510 GO:0003677|GO:0008270
Sebi151g00004 1179 Coils Coil 248 268 - -
Sebi151g00004 1179 ProSiteProfiles PARP catalytic domain profile. 765 993 IPR012317 GO:0003950
Sebi151g00004 1179 Gene3D - 2 103 IPR036957 GO:0003677|GO:0008270
Sebi151g00004 1179 FunFam Poly [ADP-ribose] polymerase 775 987 - -
Sebi151g00004 1179 Pfam Lateral organ boundaries (LOB) domain 1004 1081 IPR004883 -
Sebi151g00004 1179 SUPERFAMILY BRCT domain 402 490 IPR036420 -
Sebi151g00004 1179 SMART zf_PARP_3 107 181 IPR001510 GO:0003677|GO:0008270
Sebi151g00004 1179 SMART zf_PARP_3 11 88 IPR001510 GO:0003677|GO:0008270
Sebi151g00004 1179 SUPERFAMILY ADP-ribosylation 774 983 - -
Sebi151g00004 1179 Pfam Poly(ADP-ribose) polymerase catalytic domain 785 983 IPR012317 GO:0003950
Sebi151g00004 1179 FunFam Poly [ADP-ribose] polymerase 101 207 - -
Sebi151g00004 1179 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 640 775 IPR036616 GO:0003950
Sebi151g00004 1179 ProSiteProfiles WGR domain profile. 519 618 IPR008893 -
Sebi151g00004 1179 FunFam Poly [ADP-ribose] polymerase 235 307 - -
Sebi151g00004 1179 Pfam Poly(ADP-ribose) polymerase, regulatory domain 641 771 IPR004102 GO:0003950
Sebi151g00004 1179 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 103 193 - -
Sebi151g00004 1179 Pfam PADR1 (NUC008) domain 298 347 IPR012982 GO:0008270
Sebi151g00004 1179 Pfam WGR domain 530 608 IPR008893 -
Sebi151g00004 1179 ProSiteProfiles Generated from MSF file: '/work/www/psmaker/tmp/pfmake.input.483415'. 242 381 IPR047572 GO:0008270
Sebi151g00004 1179 ProSiteProfiles SAP motif profile. 270 304 IPR003034 -
Sebi151g00004 1179 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 99 - -
Sebi151g00004 1179 Coils Coil 1063 1083 - -
Sebi151g00004 1179 FunFam Poly [ADP-ribose] polymerase 2 100 - -
Sebi151g00004 1179 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 107 178 IPR001510 GO:0003677|GO:0008270
Sebi151g00004 1179 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 11 87 IPR001510 GO:0003677|GO:0008270
Sebi151g00004 1179 CDD WGR_PARP1_like 520 625 - -
Sebi151g00004 1179 ProSiteProfiles BRCT domain profile. 400 490 IPR001357 -
Sebi151g00004 1179 MobiDBLite consensus disorder prediction 193 224 - -
Sebi151g00004 1179 Gene3D - 308 368 IPR038650 -
Sebi151g00004 1179 SMART WGR_cls 530 613 IPR008893 -
Sebi151g00004 1179 FunFam Poly [ADP-ribose] polymerase 308 369 - -
Sebi151g00004 1179 ProSiteProfiles PARP alpha-helical domain profile. 640 758 IPR004102 GO:0003950
Sebi151g00004 1179 MobiDBLite consensus disorder prediction 179 249 - -
Sebi151g00004 1179 FunFam Poly [ADP-ribose] polymerase 398 499 - -
Sebi151g00004 1179 Gene3D - 234 307 - -
Sebi151g00004 1179 Gene3D - 775 987 - -
Sebi151g00004 1179 Gene3D BRCT domain 396 497 IPR036420 -
Sebi151g00004 1179 FunFam Poly [ADP-ribose] polymerase 633 774 - -
Sebi151g00004 1179 SMART PADR1_2 296 349 IPR012982 GO:0008270
Sebi151g00004 1179 CDD parp_like 640 983 - -
Sebi151g00004 1179 Pfam BRCA1 C Terminus (BRCT) domain 407 477 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi151g00004 Sebi-Chr151 42546 56131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi151g00004 1012 1179 AS2 family AT2G42430 50.971 2.34e-45 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sebi151g00004 PARP 4.8e-71 CL0084
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi151g00004 K24070 - gmx:100815900 1694.09