Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi150g00042 ATGGAGGACAACGACGAAGACGACGAGCCCATCCAGAAGCTTCTAGAACCTTTCGGGAAGGACGAGATCACAAAGCTTCTGTGCGAGGCGGCGATCAAACACCGCGATGTGGCGGAGCGCATCCGTAAAGCGGCGGACGCAGACCCCGCCCACCGGAAAATCTTCGTGCACGGCCTCGGCTGGGACACTACCGCCGAAACCCTAACCACCGCGTTCCGCCAATACGGCGAGATCGAGGATTGCAAGGCCGTCTCTGACAAGGTCACCGGAAAGTCCAAGGGCTACGGCTTCATCCTCTTCAAGTCCCGCCGCGCCGCTCGCCTCGCCCTCCGCGAGCCGCAGAAGAAGATCGGCAATCGCATGACCGCTTGCCAGCTGGCATACCTTGGTCCCGTCCATGGAAACAACGCTAGCGCCTCCACTGCGGCTGCAACTCCGGGGGCTTCAGAGTACACGCAAAGGAAGATCTATGTGAGTAATGTGGGTGCCGATTTGGACCCGCGGAGGCTTTTGGCATTCTTCTCGCAGTTTGGGGAAATCGAGGAAGGGCCGTTAGGGCTTGACAAAGTGACTGGAAAACTGAGAGGGTTCTGTTTACTAGTGTACAAGAGTGTGGAAGGTGCCAAGAAGGCTTTGGAGCAGCCTCACAAGGAGTTTGAGGGTCACATTTTGCATTGTCAGAAAGCAATTGATGGTCCCAAGCAACAGCGTTTTCCATCGCAGCATCAGAATAATGCTCACACTGCAGCGGTGACAGGGTCATCGTTTCAGAGGAATGAGAATGCTGCCTTTGTTGGTGGACTTGCTGCCACCACAGTGCCGGGGCATTTGGTTGCACCAGCTGTGCCGGCCATTGGGTTTAACCAGGGAGGAGCTGCTGCGGCTGCACAGACACTGAATCCGGCTCTTGGGCAGGCGCTGACGGCGCTGCTTGCATCTCAGGGTGCTGGCTTAGGGCTGAGTGGCTTGTTGGGGACGCTAGGATCGCCAGCAGCTGTGAACAATGCTGGTCATGGATTGCAGGGTGGTTATAATAGCCAGGCAAATGTGAATCCAGCGGGTATTGCAGGGTATGGGAATCAAGTAGGATTGCAGGTTGCATATCCAAACCAGCAGCAGGTGGGGCAAGGTGGCTCTGGAAGAGGGCAGCAACAGCAGCAGCATGGTGTTGGGCAATATGGTGGTGTTGCCCCTTACATGAGCCATTAG 1209 0.5649 MEDNDEDDEPIQKLLEPFGKDEITKLLCEAAIKHRDVAERIRKAADADPAHRKIFVHGLGWDTTAETLTTAFRQYGEIEDCKAVSDKVTGKSKGYGFILFKSRRAARLALREPQKKIGNRMTACQLAYLGPVHGNNASASTAAATPGASEYTQRKIYVSNVGADLDPRRLLAFFSQFGEIEEGPLGLDKVTGKLRGFCLLVYKSVEGAKKALEQPHKEFEGHILHCQKAIDGPKQQRFPSQHQNNAHTAAVTGSSFQRNENAAFVGGLAATTVPGHLVAPAVPAIGFNQGGAAAAAQTLNPALGQALTALLASQGAGLGLSGLLGTLGSPAAVNNAGHGLQGGYNSQANVNPAGIAGYGNQVGLQVAYPNQQQVGQGGSGRGQQQQQHGVGQYGGVAPYMSH 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi150g00042 402 SUPERFAMILY RNA-binding domain, RBD 44 131 IPR035979 GO:0003676
Sebi150g00042 402 Gene3D - 131 249 IPR012677 -
Sebi150g00042 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 237 IPR000504 GO:0003723
Sebi150g00042 402 SUPERFAMILY RNA-binding domain, RBD 144 246 IPR035979 GO:0003676
Sebi150g00042 402 SMART rrm1_1 53 125 IPR000504 GO:0003723
Sebi150g00042 402 SMART rrm1_1 155 227 IPR000504 GO:0003723
Sebi150g00042 402 Gene3D - 3 130 IPR012677 -
Sebi150g00042 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 224 IPR000504 GO:0003723
Sebi150g00042 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 120 IPR000504 GO:0003723
Sebi150g00042 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 144 IPR000504 GO:0003723
Sebi150g00042 402 MobiDBLite consensus disorder prediction 372 402 - -
Sebi150g00042 402 MobiDBLite consensus disorder prediction 372 391 - -
Sebi150g00042 402 PANTHER GEO13361P1-RELATED 140 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi150g00042 Sebi-Chr150 1594956 1596164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi150g00042 153 233 C2H2 Transcription Factor Family AT2G19380 35.802 2.11e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi150g00042 K12741 - qsu:112025393 476.092