Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi150g00006 ATGACTTGTTTCCATTTCTTGTGTAGTAAGAAACCAACTTCTTTACGAAGACGAAATATTGACATCGATGAAGAACTTTCAGGCATTCAAAATGTAAGAATCTATACCTACAAAGAACTAAAAGTTGCCACTGATGATTTCAGTCCGGCTAATAAAATCGGGGAAGGTGGTTTTGGTTCTGTCTATAAGGGATTGCTAAAAGATGGGAAAATAGCTGCTATAAAAGTTCTTTCAGCTGAATCAAGACAAGGGGTGAAGGAATTCATGACAGAGATTAATGTGATCTCAGAAATAGAGCATGAAAATTTGGTTAAACTATATGGTTGTTGCGTGGAAGGCGATCACCGAATATTAGTCTACAATTACCTTGAGAACAATAGCCTTGCACAAACCCTTCTAGGTGGAGGTCACAGCAATGTCTACTTTGATTGGCGAACACGATCTAGGATATGCATTGGGGTTGCACGTGGGCTTGCCTTTCTTCATGAAGAAGTACAGCCACATATTGTTCACAGGGATATAAAGGCAAGCAATATTCTCCTTGACAAGAACCTTAGGCCTATGATTGCAGATTTTGGTCTTGCAAAGCTTATTCCAACATACATGACTCATGTCAGCACACGTGTTGCAGGAACAATAGGTTATTTGGCACCAGAGTATGCAATAAGGGGGCAGCTGACACGTAAAGCAGATATTTACAGTTTTGGCGTCCTCCTTGTGGAGATAGTCACTGGGAGATGTAACACAAATACACGATTACCTCTAGGAGAGCAATATATTCTAGAAAAGACATGGGAGCTTTATGAGCGAAAGGAATTGGTAGAGCTGGTAGACATATCACTAAATGGGGAATTCGATGCTGAGGAGGCTTGTAATATTCTGAAAATTGGACTTCTTTGCACTCAGGATAATCCTAAGCTCAGGCCAACCATGTCTTCTGTGGTCAAGATGCTCACTGGAGAAAAAGATGTTAATGAAAGTAAGATTACAAAACCAGGCTTGATTTCAGATGTTATGGACCTTAAAATCAGAGAGCCAAAAAATAATAATGATACGAAGACTTCATCTTCATACAATGCTTCTTCTGCCTCAGACAGTCAGGCTACTACCATGTCATTAGCTACTTCAAGTGCTGCAACTACAACCTTCAGTGTAAAATATGATCAAACCATGTAA 1176 0.3971 MTCFHFLCSKKPTSLRRRNIDIDEELSGIQNVRIYTYKELKVATDDFSPANKIGEGGFGSVYKGLLKDGKIAAIKVLSAESRQGVKEFMTEINVISEIEHENLVKLYGCCVEGDHRILVYNYLENNSLAQTLLGGGHSNVYFDWRTRSRICIGVARGLAFLHEEVQPHIVHRDIKASNILLDKNLRPMIADFGLAKLIPTYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLVEIVTGRCNTNTRLPLGEQYILEKTWELYERKELVELVDISLNGEFDAEEACNILKIGLLCTQDNPKLRPTMSSVVKMLTGEKDVNESKITKPGLISDVMDLKIREPKNNNDTKTSSSYNASSASDSQATTMSLATSSAATTTFSVKYDQTM 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi150g00006 391 Gene3D Phosphorylase Kinase; domain 1 11 122 - -
Sebi150g00006 391 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 359 - -
Sebi150g00006 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Sebi150g00006 391 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Sebi150g00006 391 ProSiteProfiles Protein kinase domain profile. 47 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi150g00006 391 FunFam cold-responsive protein kinase 1 17 122 - -
Sebi150g00006 391 MobiDBLite consensus disorder prediction 350 367 - -
Sebi150g00006 391 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi150g00006 391 Pfam Protein kinase domain 50 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi150g00006 391 SUPERFAMILY Protein kinase-like (PK-like) 24 318 IPR011009 -
Sebi150g00006 391 FunFam cold-responsive protein kinase 1 123 334 - -
Sebi150g00006 391 CDD STKc_IRAK 53 320 - -
Sebi150g00006 391 PIRSF TyrPK_CSF1-R 282 389 - -
Sebi150g00006 391 PIRSF TyrPK_CSF1-R 147 253 - -
Sebi150g00006 391 PIRSF TyrPK_CSF1-R 47 128 - -
Sebi150g00006 391 Gene3D Transferase(Phosphotransferase) domain 1 123 333 - -
Sebi150g00006 391 MobiDBLite consensus disorder prediction 343 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi150g00006 Sebi-Chr150 202713 206589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi150g00006 16 374 Receptor kinase-like Gene Family AT1G56120 51.524 2.64e-115 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi150g00006 Pkinase 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi150g00006 - - gmx:100800503 613.224